V2: Removal of namespace in schema files. (#51)

* Removal of former namespace. * Removal of submodule name in paths. * Keep the module prefix. --------- Co-authored-by: raphaelgazzotti <[email protected]>
openMetadataInitiative · Sep 24, 2024 · 3a04392 · 3a04392
1 parent 59f93f2
commit 3a04392
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Showing 12 changed files with 75 additions and 75 deletions.
diff --git a/schemas/activity/cellPatching.schema.tpl.json b/schemas/activity/cellPatching.schema.tpl.json
@@ -1,12 +1,12 @@
 {
-  "_type": "https://openminds.ebrains.eu/ephys/CellPatching",
+  "_type": "ephys:CellPatching",
   "_extends": "/specimenPrep/schemas/activity/devicePlacement.schema.tpl.json",
   "properties": {
     "bathTemperature": {
       "_instruction": "Enter the temperature of the bath solution.",
       "_embeddedTypes": [
-        "https://openminds.ebrains.eu/core/QuantitativeValue",
-        "https://openminds.ebrains.eu/core/QuantitativeValueRange"
+        "core:QuantitativeValue",
+        "core:QuantitativeValueRange"
       ]
     },
     "device": {
@@ -15,19 +15,19 @@
       "uniqueItems": true,
       "_instruction": "Add all patch pipettes placed during this activity.",
       "_linkedTypes": [
-        "https://openminds.ebrains.eu/ephys/PipetteUsage"
+        "ephys:PipetteUsage"
       ]
     },
     "tissueBathSolution": {
       "_instruction": "Add the chemical mixture used as bath solution during this activity.",
       "_linkedTypes": [
-        "https://openminds.ebrains.eu/chemicals/ChemicalMixture"
+        "chemicals:ChemicalMixture"
       ]
     },
     "variation": {
       "_instruction": "Add the patch-clamp variation used during this activity.",
       "_linkedTypes": [
-        "https://openminds.ebrains.eu/controlledTerms/PatchClampVariation"
+        "controlledTerms:PatchClampVariation"
       ]
     }
   }

diff --git a/schemas/activity/electrodePlacement.schema.tpl.json b/schemas/activity/electrodePlacement.schema.tpl.json
@@ -1,5 +1,5 @@
 {
-  "_type": "https://openminds.ebrains.eu/ephys/ElectrodePlacement",
+  "_type": "ephys:ElectrodePlacement",
   "_extends": "/specimenPrep/schemas/activity/devicePlacement.schema.tpl.json",
   "properties": {
     "device": {
@@ -8,8 +8,8 @@
       "uniqueItems": true,
       "_instruction": "Add all electrodes placed during this activity.",
       "_linkedTypes": [
-        "https://openminds.ebrains.eu/ephys/ElectrodeUsage",
-        "https://openminds.ebrains.eu/ephys/ElectrodeArrayUsage"
+        "ephys:ElectrodeUsage",
+        "ephys:ElectrodeArrayUsage"
       ]
     }
   }

diff --git a/schemas/activity/recordingActivity.schema.tpl.json b/schemas/activity/recordingActivity.schema.tpl.json
@@ -1,5 +1,5 @@
 {
-  "_type": "https://openminds.ebrains.eu/ephys/RecordingActivity",
+  "_type": "ephys:RecordingActivity",
   "_extends": "/core/schemas/research/experimentalActivity.schema.tpl.json",
   "properties": {
     "device": {
@@ -8,17 +8,17 @@
       "uniqueItems": true,
       "_instruction": "Add all devices used during this recording activity.",
       "_linkedTypes": [
-        "https://openminds.ebrains.eu/ephys/ElectrodeArrayUsage",
-        "https://openminds.ebrains.eu/ephys/ElectrodeUsage",        
-        "https://openminds.ebrains.eu/ephys/PipetteUsage"
+        "ephys:ElectrodeArrayUsage",
+        "ephys:ElectrodeUsage",        
+        "ephys:PipetteUsage"
       ]
     },
     "input": {
       "_linkedTypes": [       
-        "https://openminds.ebrains.eu/core/SubjectGroupState",
-        "https://openminds.ebrains.eu/core/SubjectState",
-        "https://openminds.ebrains.eu/core/TissueSampleCollectionState",
-        "https://openminds.ebrains.eu/core/TissueSampleState"
+        "core:SubjectGroupState",
+        "core:SubjectState",
+        "core:TissueSampleCollectionState",
+        "core:TissueSampleState"
       ]
     },
     "internalIdentifier": {

diff --git a/schemas/device/electrode.schema.tpl.json b/schemas/device/electrode.schema.tpl.json
@@ -1,5 +1,5 @@
 {
-  "_type": "https://openminds.ebrains.eu/ephys/Electrode",
+  "_type": "ephys:Electrode",
   "_categories": [
     "setupComponent"
   ],
@@ -8,17 +8,17 @@
     "conductorMaterial": {
       "_instruction": "Add the conductor material of this electrode.",
       "_linkedTypes": [
-        "https://openminds.ebrains.eu/chemicals/ChemicalMixture",
-        "https://openminds.ebrains.eu/chemicals/ChemicalSubstance",
-        "https://openminds.ebrains.eu/controlledTerms/MolecularEntity"
+        "chemicals:ChemicalMixture",
+        "chemicals:ChemicalSubstance",
+        "controlledTerms:MolecularEntity"
       ]
     },
     "insulatorMaterial": {
       "_instruction": "Add the insulator material of this electrode.",
       "_linkedTypes": [
-        "https://openminds.ebrains.eu/chemicals/ChemicalMixture",
-        "https://openminds.ebrains.eu/chemicals/ChemicalSubstance",
-        "https://openminds.ebrains.eu/controlledTerms/MolecularEntity"
+        "chemicals:ChemicalMixture",
+        "chemicals:ChemicalSubstance",
+        "controlledTerms:MolecularEntity"
       ]
     },
     "internalIdentifier": {
@@ -28,8 +28,8 @@
     "intrinsicResistance": {
       "_instruction": "Enter the intrinsic resistance of this electrode.",
       "_embeddedTypes": [
-        "https://openminds.ebrains.eu/core/QuantitativeValue",
-        "https://openminds.ebrains.eu/core/QuantitativeValueRange"
+        "core:QuantitativeValue",
+        "core:QuantitativeValueRange"
       ]
     }
   }

diff --git a/schemas/device/electrodeArray.schema.tpl.json b/schemas/device/electrodeArray.schema.tpl.json
@@ -1,5 +1,5 @@
 {
-  "_type": "https://openminds.ebrains.eu/ephys/ElectrodeArray",
+  "_type": "ephys:ElectrodeArray",
   "_extends": "/core/schemas/products/device.schema.tpl.json",
   "_categories": [
     "setupComponent"
@@ -12,9 +12,9 @@
     "conductorMaterial": {
       "_instruction": "Add the conductor material of this electrode array.",
       "_linkedTypes": [
-        "https://openminds.ebrains.eu/chemicals/ChemicalMixture",
-        "https://openminds.ebrains.eu/chemicals/ChemicalSubstance",
-        "https://openminds.ebrains.eu/controlledTerms/MolecularEntity"
+        "chemicals:ChemicalMixture",
+        "chemicals:ChemicalSubstance",
+        "controlledTerms:MolecularEntity"
       ]
     },
     "electrodeIdentifier": {
@@ -29,9 +29,9 @@
     "insulatorMaterial": {
       "_instruction": "Add the insulator material of this electrode array.",
       "_linkedTypes": [
-        "https://openminds.ebrains.eu/chemicals/ChemicalMixture",
-        "https://openminds.ebrains.eu/chemicals/ChemicalSubstance",
-        "https://openminds.ebrains.eu/controlledTerms/MolecularEntity"
+        "chemicals:ChemicalMixture",
+        "chemicals:ChemicalSubstance",
+        "controlledTerms:MolecularEntity"
       ]
     },
     "internalIdentifier": {
@@ -41,8 +41,8 @@
     "intrinsicResistance": {
       "_instruction": "Enter the intrinsic resistance of this electrode array.",
       "_embeddedTypes": [
-        "https://openminds.ebrains.eu/core/QuantitativeValue",
-        "https://openminds.ebrains.eu/core/QuantitativeValueRange"
+        "core:QuantitativeValue",
+        "core:QuantitativeValueRange"
       ]
     },
     "numberOfElectrodes": {

diff --git a/schemas/device/electrodeArrayUsage.schema.tpl.json b/schemas/device/electrodeArrayUsage.schema.tpl.json
@@ -1,5 +1,5 @@
 {
-  "_type": "https://openminds.ebrains.eu/ephys/ElectrodeArrayUsage",
+  "_type": "ephys:ElectrodeArrayUsage",
   "_extends": "/core/schemas/research/deviceUsage.schema.tpl.json",
   "properties": {
     "anatomicalLocationOfArray": {
@@ -26,14 +26,14 @@
       "uniqueItems": true,
       "_instruction": "Enter the contact resistance for each electrode of this array during its use, in the same order that the electrode identifiers for this electrode array have been specified.",
       "_embeddedTypes": [
-        "https://openminds.ebrains.eu/core/QuantitativeValue",
-        "https://openminds.ebrains.eu/core/QuantitativeValueRange"
+        "core:QuantitativeValue",
+        "core:QuantitativeValueRange"
       ]
     },    
     "device": {
       "_instruction": "Add the electrode array used.",
       "_linkedTypes": [
-        "https://openminds.ebrains.eu/ephys/ElectrodeArray"
+        "ephys:ElectrodeArray"
       ]
     },   
     "spatialLocationOfElectrodes": {

diff --git a/schemas/device/electrodeUsage.schema.tpl.json b/schemas/device/electrodeUsage.schema.tpl.json
@@ -1,5 +1,5 @@
 {
-  "_type": "https://openminds.ebrains.eu/ephys/ElectrodeUsage",
+  "_type": "ephys:ElectrodeUsage",
   "_extends": "/core/schemas/research/deviceUsage.schema.tpl.json",
   "properties": {
     "anatomicalLocation": {
@@ -11,14 +11,14 @@
     "contactResistance": {
       "_instruction": "Enter the contact resistance of this electrode during its use.",
       "_embeddedTypes": [
-        "https://openminds.ebrains.eu/core/QuantitativeValue",
-        "https://openminds.ebrains.eu/core/QuantitativeValueRange"
+        "core:QuantitativeValue",
+        "core:QuantitativeValueRange"
       ]
     },    
     "device": {
       "_instruction": "Add the electrode used.",
       "_linkedTypes": [
-        "https://openminds.ebrains.eu/ephys/Electrode"
+        "ephys:Electrode"
       ]
     },   
     "spatialLocation": {

diff --git a/schemas/device/pipette.schema.tpl.json b/schemas/device/pipette.schema.tpl.json
@@ -1,17 +1,17 @@
 {
-  "_type": "https://openminds.ebrains.eu/ephys/Pipette",
+  "_type": "ephys:Pipette",
   "_extends": "/core/schemas/products/device.schema.tpl.json",
   "properties": {
     "externalDiameter": {     
       "_instruction": "Enter the external diameter of the pipette.",
       "_embeddedTypes": [
-        "https://openminds.ebrains.eu/core/QuantitativeValue"
+        "core:QuantitativeValue"
       ]
     },
     "internalDiameter": {      
       "_instruction": "Enter the internal diameter of the pipette.",
       "_embeddedTypes": [
-        "https://openminds.ebrains.eu/core/QuantitativeValue"
+        "core:QuantitativeValue"
       ]
     },
     "internalIdentifier": {
@@ -21,9 +21,9 @@
     "material": {
       "_instruction": "Add the material that the pipette is made of.",
       "_linkedTypes": [
-        "https://openminds.ebrains.eu/chemicals/ChemicalMixture",
-        "https://openminds.ebrains.eu/chemicals/ChemicalSubstance",
-        "https://openminds.ebrains.eu/controlledTerms/MolecularEntity"
+        "chemicals:ChemicalMixture",
+        "chemicals:ChemicalSubstance",
+        "controlledTerms:MolecularEntity"
       ]
     }
   }

diff --git a/schemas/device/pipetteUsage.schema.tpl.json b/schemas/device/pipetteUsage.schema.tpl.json
@@ -1,5 +1,5 @@
 {
-  "_type": "https://openminds.ebrains.eu/ephys/PipetteUsage",
+  "_type": "ephys:PipetteUsage",
   "_extends": "/core/schemas/research/deviceUsage.schema.tpl.json",  
   "required": [
     "pipetteSolution"
@@ -16,76 +16,76 @@
       "type": "array",
       "minItems": 1,
       "_embeddedTypes": [
-        "https://openminds.ebrains.eu/core/Measurement"
+        "core:Measurement"
       ]
     },
     "compensationCurrent": {
       "_instruction": "Enter the compensation current for the series resistance of the pipette measured during its use.",
       "_embeddedTypes": [
-        "https://openminds.ebrains.eu/core/Measurement"
+        "core:Measurement"
       ]
     },
     "device": {
       "_instruction": "Add the pipette used.",
       "_linkedTypes": [
-        "https://openminds.ebrains.eu/ephys/Pipette"
+        "ephys:Pipette"
       ]
     },      
     "endMembranePotential": {
       "_instruction": "Enter the membrane potential of e.g., a patched cell at the end of a recording measured during the use of this pipette.",
       "_embeddedTypes": [
-        "https://openminds.ebrains.eu/core/Measurement"
+        "core:Measurement"
       ]
     },    
     "holdingPotential": {
       "_instruction": "Enter the holding membrane potential of e.g., a patched cell measured during the use of this pipette.",
       "_embeddedTypes": [
-        "https://openminds.ebrains.eu/core/Measurement"
+        "core:Measurement"
       ]
     },
     "inputResistance": {
       "_instruction": "Enter the input resistance of e.g., a patched cell measured during the use of this pipette.",
       "_embeddedTypes": [
-        "https://openminds.ebrains.eu/core/Measurement"
+        "core:Measurement"
       ]
     },
     "labelingCompound": {
       "_instruction": "Add the used compound for labelling e.g., a patched cell during the use of this pipette. ",
       "_linkedTypes": [
-        "https://openminds.ebrains.eu/chemicals/ChemicalMixture",
-        "https://openminds.ebrains.eu/chemicals/ChemicalSubstance",
-        "https://openminds.ebrains.eu/controlledTerms/MolecularEntity"
+        "chemicals:ChemicalMixture",
+        "chemicals:ChemicalSubstance",
+        "controlledTerms:MolecularEntity"
       ]
     },
     "liquidJunctionPotential": {
       "_instruction": "Enter the liquid junction potential of e.g., a patched cell measured during the use of this pipette.",
       "_embeddedTypes": [
-        "https://openminds.ebrains.eu/core/Measurement"
+        "core:Measurement"
       ]
     },
     "pipetteResistance": {
       "_instruction": "Enter the resistance of the pipette during its use.",
       "_embeddedTypes": [
-        "https://openminds.ebrains.eu/core/QuantitativeValue",
-        "https://openminds.ebrains.eu/core/QuantitativeValueRange"
+        "core:QuantitativeValue",
+        "core:QuantitativeValueRange"
       ]
     },
     "pipetteSolution": {
       "_instruction": "Enter the solution with which the pipette was filled during its use.",
       "_linkedTypes": [
-        "https://openminds.ebrains.eu/chemicals/ChemicalMixture"
+        "chemicals:ChemicalMixture"
       ]
     },
     "sealResistance": {
       "_instruction": "Enter the seal resistance of e.g., a patched cell measured during the use of this pipette.",
       "_embeddedTypes": [
-        "https://openminds.ebrains.eu/core/Measurement"
+        "core:Measurement"
       ]
     },
     "seriesResistance": {
       "_instruction": "Enter the series resistance of the pipette measured during its use.",
       "_embeddedTypes": [
-        "https://openminds.ebrains.eu/core/Measurement"
+        "core:Measurement"
       ]
     }, 
     "spatialLocation": {
@@ -97,7 +97,7 @@
     "startMembranePotential": {
       "_instruction": "Enter the membrane potential of e.g., a patched cell at the beginning of a recording measured during the use of this pipette.",
       "_embeddedTypes": [
-        "https://openminds.ebrains.eu/core/Measurement"
+        "core:Measurement"
       ]
     }
   }

diff --git a/schemas/entity/channel.schema.tpl.json b/schemas/entity/channel.schema.tpl.json
@@ -1,5 +1,5 @@
 {
-  "_type": "https://openminds.ebrains.eu/ephys/Channel",
+  "_type": "ephys:Channel",
   "required": [
     "internalIdentifier",
     "unit"
@@ -12,7 +12,7 @@
     "unit": {
       "_instruction": "Add the unit of measurement for this channel.",
       "_linkedTypes": [
-        "https://openminds.ebrains.eu/controlledTerms/UnitOfMeasurement"
+        "controlledTerms:UnitOfMeasurement"
       ]
     }
   }