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Snakecase the workflows to avoid broken references
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- Had to set `git config core.ignorecase false`
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@cjsha
cjsha committed Aug 28, 2024
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169 changes: 169 additions & 0 deletions workflows/examples/headstage64.bonsai
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<?xml version="1.0" encoding="utf-8"?>
<WorkflowBuilder Version="2.8.5"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xmlns:onix1="clr-namespace:OpenEphys.Onix1;assembly=OpenEphys.Onix1"
xmlns:viz="clr-namespace:Bonsai.Design.Visualizers;assembly=Bonsai.Design.Visualizers"
xmlns="https://bonsai-rx.org/2018/workflow">
<Workflow>
<Nodes>
<Expression xsi:type="Combinator">
<Combinator xsi:type="onix1:CreateContext">
<onix1:Driver>riffa</onix1:Driver>
<onix1:Index>0</onix1:Index>
</Combinator>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="onix1:ConfigureHeadstage64">
<onix1:Name>Headstage64</onix1:Name>
<onix1:Rhd2164>
<onix1:DeviceName>Headstage64/Rhd2164</onix1:DeviceName>
<onix1:DeviceAddress>256</onix1:DeviceAddress>
<onix1:Enable>true</onix1:Enable>
<onix1:DspCutoff>Dsp146mHz</onix1:DspCutoff>
<onix1:AnalogLowCutoff>Low100mHz</onix1:AnalogLowCutoff>
<onix1:AnalogHighCutoff>High10000Hz</onix1:AnalogHighCutoff>
</onix1:Rhd2164>
<onix1:Bno055>
<onix1:DeviceName>Headstage64/Bno055</onix1:DeviceName>
<onix1:DeviceAddress>257</onix1:DeviceAddress>
<onix1:Enable>true</onix1:Enable>
</onix1:Bno055>
<onix1:TS4231>
<onix1:DeviceName>Headstage64/TS4231</onix1:DeviceName>
<onix1:DeviceAddress>258</onix1:DeviceAddress>
<onix1:Enable>false</onix1:Enable>
</onix1:TS4231>
<onix1:ElectricalStimulator>
<onix1:DeviceName>Headstage64/Headstage64ElectricalStimulator</onix1:DeviceName>
<onix1:DeviceAddress>259</onix1:DeviceAddress>
</onix1:ElectricalStimulator>
<onix1:OpticalStimulator>
<onix1:DeviceName>Headstage64/Headstage64OpticalStimulator</onix1:DeviceName>
<onix1:DeviceAddress>260</onix1:DeviceAddress>
</onix1:OpticalStimulator>
<onix1:Port>PortA</onix1:Port>
<onix1:PortVoltage xsi:nil="true" />
</Combinator>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="onix1:ConfigureBreakoutBoard">
<onix1:Name>BreakoutBoard</onix1:Name>
<onix1:Heartbeat>
<onix1:DeviceName>BreakoutBoard/Heartbeat</onix1:DeviceName>
<onix1:DeviceAddress>0</onix1:DeviceAddress>
<onix1:Enable>true</onix1:Enable>
<onix1:BeatsPerSecond>10</onix1:BeatsPerSecond>
</onix1:Heartbeat>
<onix1:AnalogIO>
<onix1:DeviceName>BreakoutBoard/AnalogIO</onix1:DeviceName>
<onix1:DeviceAddress>6</onix1:DeviceAddress>
<onix1:Enable>true</onix1:Enable>
<onix1:InputRange0>TenVolts</onix1:InputRange0>
<onix1:InputRange1>TenVolts</onix1:InputRange1>
<onix1:InputRange2>TenVolts</onix1:InputRange2>
<onix1:InputRange3>TenVolts</onix1:InputRange3>
<onix1:InputRange4>TenVolts</onix1:InputRange4>
<onix1:InputRange5>TenVolts</onix1:InputRange5>
<onix1:InputRange6>TenVolts</onix1:InputRange6>
<onix1:InputRange7>TenVolts</onix1:InputRange7>
<onix1:InputRange8>TenVolts</onix1:InputRange8>
<onix1:InputRange9>TenVolts</onix1:InputRange9>
<onix1:InputRange10>TenVolts</onix1:InputRange10>
<onix1:InputRange11>TenVolts</onix1:InputRange11>
<onix1:Direction0>Input</onix1:Direction0>
<onix1:Direction1>Input</onix1:Direction1>
<onix1:Direction2>Input</onix1:Direction2>
<onix1:Direction3>Input</onix1:Direction3>
<onix1:Direction4>Input</onix1:Direction4>
<onix1:Direction5>Input</onix1:Direction5>
<onix1:Direction6>Input</onix1:Direction6>
<onix1:Direction7>Input</onix1:Direction7>
<onix1:Direction8>Input</onix1:Direction8>
<onix1:Direction9>Input</onix1:Direction9>
<onix1:Direction10>Input</onix1:Direction10>
<onix1:Direction11>Input</onix1:Direction11>
</onix1:AnalogIO>
<onix1:DigitalIO>
<onix1:DeviceName>BreakoutBoard/DigitalIO</onix1:DeviceName>
<onix1:DeviceAddress>7</onix1:DeviceAddress>
<onix1:Enable>true</onix1:Enable>
</onix1:DigitalIO>
<onix1:MemoryMonitor>
<onix1:DeviceName>BreakoutBoard/MemoryMonitor</onix1:DeviceName>
<onix1:DeviceAddress>10</onix1:DeviceAddress>
<onix1:Enable>false</onix1:Enable>
<onix1:SamplesPerSecond>10</onix1:SamplesPerSecond>
</onix1:MemoryMonitor>
</Combinator>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="onix1:StartAcquisition">
<onix1:ReadSize>2048</onix1:ReadSize>
<onix1:WriteSize>2048</onix1:WriteSize>
</Combinator>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="onix1:Rhd2164Data">
<onix1:DeviceName>Headstage64/Rhd2164</onix1:DeviceName>
<onix1:BufferSize>30</onix1:BufferSize>
</Combinator>
</Expression>
<Expression xsi:type="MemberSelector">
<Selector>AmplifierData</Selector>
</Expression>
<Expression xsi:type="MemberSelector">
<Selector>AuxData</Selector>
</Expression>
<Expression xsi:type="MemberSelector">
<Selector>Clock</Selector>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="onix1:TS4231V1Data">
<onix1:DeviceName>Headstage64/TS4231</onix1:DeviceName>
</Combinator>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="onix1:Bno055Data">
<onix1:DeviceName>Headstage64/Bno055</onix1:DeviceName>
</Combinator>
</Expression>
<Expression xsi:type="MemberSelector">
<Selector>Clock</Selector>
</Expression>
<Expression xsi:type="MemberSelector">
<Selector>Quaternion</Selector>
</Expression>
<Expression xsi:type="IncludeWorkflow" Path="Extensions\Commutator.bonsai">
<PortName>COM6</PortName>
</Expression>
<Expression xsi:type="viz:RollingGraphBuilder">
<viz:IndexSelector />
<viz:ValueSelector>X,Y,Z,W</viz:ValueSelector>
<viz:SymbolType>None</viz:SymbolType>
<viz:LineWidth>1</viz:LineWidth>
<viz:Capacity>100</viz:Capacity>
<viz:Min xsi:nil="true" />
<viz:Max xsi:nil="true" />
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="onix1:MemoryMonitorData" />
</Expression>
<Expression xsi:type="MemberSelector">
<Selector>PercentUsed</Selector>
</Expression>
</Nodes>
<Edges>
<Edge From="0" To="1" Label="Source1" />
<Edge From="1" To="2" Label="Source1" />
<Edge From="2" To="3" Label="Source1" />
<Edge From="4" To="5" Label="Source1" />
<Edge From="4" To="6" Label="Source1" />
<Edge From="4" To="7" Label="Source1" />
<Edge From="9" To="10" Label="Source1" />
<Edge From="9" To="11" Label="Source1" />
<Edge From="11" To="12" Label="Source1" />
<Edge From="11" To="13" Label="Source1" />
<Edge From="14" To="15" Label="Source1" />
</Edges>
</Workflow>
</WorkflowBuilder>
143 changes: 143 additions & 0 deletions workflows/examples/neuropixelsv1e.bonsai
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<?xml version="1.0" encoding="utf-8"?>
<WorkflowBuilder Version="2.8.5"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xmlns:onix1="clr-namespace:OpenEphys.Onix1;assembly=OpenEphys.Onix1"
xmlns:rx="clr-namespace:Bonsai.Reactive;assembly=Bonsai.Core"
xmlns:io="clr-namespace:Bonsai.IO;assembly=Bonsai.System"
xmlns:dsp="clr-namespace:Bonsai.Dsp;assembly=Bonsai.Dsp"
xmlns="https://bonsai-rx.org/2018/workflow">
<Workflow>
<Nodes>
<Expression xsi:type="Combinator">
<Combinator xsi:type="onix1:CreateContext">
<onix1:Driver>riffa</onix1:Driver>
<onix1:Index>0</onix1:Index>
</Combinator>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="onix1:ConfigureNeuropixelsV1eHeadstage">
<onix1:Name>NeuropixelsV1eHeadstage</onix1:Name>
<onix1:NeuropixelsV1e>
<onix1:DeviceName>NeuropixelsV1eHeadstage/NeuropixelsV1e</onix1:DeviceName>
<onix1:DeviceAddress>256</onix1:DeviceAddress>
<onix1:Enable>true</onix1:Enable>
<onix1:EnableLed>true</onix1:EnableLed>
<onix1:SpikeAmplifierGain>Gain1000</onix1:SpikeAmplifierGain>
<onix1:LfpAmplifierGain>Gain50</onix1:LfpAmplifierGain>
<onix1:Reference>External</onix1:Reference>
<onix1:SpikeFilter>true</onix1:SpikeFilter>
</onix1:NeuropixelsV1e>
<onix1:Bno055>
<onix1:DeviceName>NeuropixelsV1eHeadstage/NeuropixelsV1eBno055</onix1:DeviceName>
<onix1:DeviceAddress>257</onix1:DeviceAddress>
<onix1:Enable>true</onix1:Enable>
</onix1:Bno055>
<onix1:Port>PortA</onix1:Port>
<onix1:PortVoltage xsi:nil="true" />
</Combinator>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="onix1:StartAcquisition">
<onix1:ReadSize>4096</onix1:ReadSize>
<onix1:WriteSize>2048</onix1:WriteSize>
</Combinator>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="rx:Timestamp" />
</Expression>
<Expression xsi:type="io:CsvWriter">
<io:FileName>start-time_.csv</io:FileName>
<io:Append>false</io:Append>
<io:Overwrite>false</io:Overwrite>
<io:Suffix>Timestamp</io:Suffix>
<io:IncludeHeader>true</io:IncludeHeader>
<io:Selector>Timestamp,Value.AcquisitionClockHz,Value.BlockReadSize,Value.BlockWriteSize</io:Selector>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="onix1:PortStatus">
<onix1:DeviceName>NeuropixelsV2eHeadstage/PortController</onix1:DeviceName>
</Combinator>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="rx:Timestamp" />
</Expression>
<Expression xsi:type="io:CsvWriter">
<io:FileName>port-status_.csv</io:FileName>
<io:Append>false</io:Append>
<io:Overwrite>false</io:Overwrite>
<io:Suffix>Timestamp</io:Suffix>
<io:IncludeHeader>false</io:IncludeHeader>
<io:Selector>Timestamp,Value.Clock,Value.StatusCode,Value.SerdesLocked,Value.SerdesPass</io:Selector>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="onix1:NeuropixelsV1eData">
<onix1:BufferSize>36</onix1:BufferSize>
</Combinator>
</Expression>
<Expression xsi:type="MemberSelector">
<Selector>Clock</Selector>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="dsp:MatrixWriter">
<dsp:Path>probe-a-clock_.raw</dsp:Path>
<dsp:Suffix>Timestamp</dsp:Suffix>
<dsp:Overwrite>false</dsp:Overwrite>
<dsp:Layout>ColumnMajor</dsp:Layout>
</Combinator>
</Expression>
<Expression xsi:type="MemberSelector">
<Selector>AmplifierData</Selector>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="dsp:MatrixWriter">
<dsp:Path>probe-a-ephys_.raw</dsp:Path>
<dsp:Suffix>Timestamp</dsp:Suffix>
<dsp:Overwrite>false</dsp:Overwrite>
<dsp:Layout>ColumnMajor</dsp:Layout>
</Combinator>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="onix1:NeuropixelsV1eBno055Data" />
</Expression>
<Expression xsi:type="io:CsvWriter">
<io:FileName>bno055_.csv</io:FileName>
<io:Append>false</io:Append>
<io:Overwrite>false</io:Overwrite>
<io:Suffix>Timestamp</io:Suffix>
<io:IncludeHeader>false</io:IncludeHeader>
<io:Selector>it</io:Selector>
</Expression>
<Expression xsi:type="MemberSelector">
<Selector>Clock</Selector>
</Expression>
<Expression xsi:type="MemberSelector">
<Selector>Quaternion</Selector>
</Expression>
<Expression xsi:type="IncludeWorkflow" Path="OpenEphys.Commutator:AutoCommutator.bonsai">
<RotationAxis>
<X>0</X>
<Y>-1</Y>
<Z>0</Z>
</RotationAxis>
<LedEnable>true</LedEnable>
<PortName>COM4</PortName>
</Expression>
</Nodes>
<Edges>
<Edge From="0" To="1" Label="Source1" />
<Edge From="1" To="2" Label="Source1" />
<Edge From="1" To="3" Label="Source1" />
<Edge From="3" To="4" Label="Source1" />
<Edge From="5" To="6" Label="Source1" />
<Edge From="6" To="7" Label="Source1" />
<Edge From="8" To="9" Label="Source1" />
<Edge From="8" To="11" Label="Source1" />
<Edge From="9" To="10" Label="Source1" />
<Edge From="11" To="12" Label="Source1" />
<Edge From="13" To="14" Label="Source1" />
<Edge From="14" To="15" Label="Source1" />
<Edge From="14" To="16" Label="Source1" />
<Edge From="16" To="17" Label="Source1" />
</Edges>
</Workflow>
</WorkflowBuilder>
196 changes: 196 additions & 0 deletions workflows/examples/neuropixelsv2e.bonsai
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