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Fix: update ncbo_annotator gem version (#71)
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* update ncbo_annotator gem version

* update alegrograph to version 8.1.0
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@syphax-bouazzouni
syphax-bouazzouni authored Feb 29, 2024
1 parent bcf27c8 commit 360370c
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Showing 3 changed files with 55 additions and 35 deletions.
2 changes: 1 addition & 1 deletion Gemfile
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Expand Up @@ -45,7 +45,7 @@ gem 'redcarpet'

# NCBO gems (can be from a local dev path or from rubygems/git)
gem 'goo', github: 'ontoportal-lirmm/goo', branch: 'development'
gem 'ncbo_annotator', git: 'https://github.com/ontoportal-lirmm/ncbo_annotator.git', branch: 'master'
gem 'ncbo_annotator', git: 'https://github.com/ontoportal-lirmm/ncbo_annotator.git', branch: 'development'
gem 'ncbo_cron', git: 'https://github.com/ontoportal-lirmm/ncbo_cron.git', branch: 'master'
gem 'ncbo_ontology_recommender', git: 'https://github.com/ncbo/ncbo_ontology_recommender.git', branch: 'master'
gem 'sparql-client', github: 'ontoportal-lirmm/sparql-client', branch: 'master'
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86 changes: 53 additions & 33 deletions Gemfile.lock
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Expand Up @@ -11,13 +11,16 @@ GIT

GIT
remote: https://github.com/ontoportal-lirmm/goo.git
revision: f8aeea33e270960afb530064d616eaf8343b5473
revision: 1be1c83158177935cfc77230d42054de984e2d09
branch: development
specs:
goo (0.0.2)
addressable (~> 2.8)
pry
rdf (= 1.0.8)
rdf (= 3.2.11)
rdf-raptor
rdf-rdfxml
rdf-vocab
redis
rest-client
rsolr
Expand All @@ -26,8 +29,8 @@ GIT

GIT
remote: https://github.com/ontoportal-lirmm/ncbo_annotator.git
revision: 57204d8e54432ba660af4c49806e2a3019a23fa2
branch: master
revision: 1eb751b65d10ae23d45c74e0516c78754a8419f0
branch: development
specs:
ncbo_annotator (0.0.1)
goo
Expand All @@ -37,7 +40,7 @@ GIT

GIT
remote: https://github.com/ontoportal-lirmm/ncbo_cron.git
revision: f33a917aae2000270d5b560cadf7044bff822779
revision: 9ec0147203007cc368a5119ffe1a019fa8701c14
branch: master
specs:
ncbo_cron (0.0.1)
Expand All @@ -54,7 +57,7 @@ GIT

GIT
remote: https://github.com/ontoportal-lirmm/ontologies_linked_data.git
revision: 0de5f3b2db02a5d2c008ace73a34d586c24e67a7
revision: 18a45c2b8a4f8d6c9f56181b4f25b7e0b116a44c
branch: development
specs:
ontologies_linked_data (0.0.1)
Expand All @@ -74,7 +77,7 @@ GIT

GIT
remote: https://github.com/ontoportal-lirmm/sparql-client.git
revision: aed51baf4106fd0f3d0e3f9238f0aad9406aa3f0
revision: 180c818f7715baac64b2699bb452ef5c756f62c5
branch: master
specs:
sparql-client (1.0.1)
Expand Down Expand Up @@ -109,6 +112,7 @@ GEM
airbrussh (1.5.1)
sshkit (>= 1.6.1, != 1.7.0)
backports (3.24.1)
base64 (0.2.0)
bcrypt (3.1.20)
bcrypt_pbkdf (1.1.0)
bigdecimal (1.4.2)
Expand All @@ -127,7 +131,7 @@ GEM
sshkit (~> 1.3)
coderay (1.1.3)
concurrent-ruby (1.2.3)
crack (0.4.6)
crack (1.0.0)
bigdecimal
rexml
cube-ruby (0.0.3)
Expand Down Expand Up @@ -171,15 +175,15 @@ GEM
grpc (~> 1.59)
get_process_mem (0.2.7)
ffi (~> 1.0)
google-analytics-data (0.5.0)
google-analytics-data (0.6.0)
google-analytics-data-v1beta (>= 0.11, < 2.a)
google-cloud-core (~> 1.6)
google-analytics-data-v1beta (0.11.2)
google-analytics-data-v1beta (0.12.0)
gapic-common (>= 0.21.1, < 2.a)
google-cloud-errors (~> 1.0)
google-apis-analytics_v3 (0.14.0)
google-apis-core (>= 0.12.0, < 2.a)
google-apis-core (0.13.0)
google-apis-analytics_v3 (0.15.0)
google-apis-core (>= 0.14.0, < 2.a)
google-apis-core (0.14.0)
addressable (~> 2.5, >= 2.5.1)
googleauth (~> 1.9)
httpclient (>= 2.8.1, < 3.a)
Expand All @@ -193,31 +197,32 @@ GEM
google-cloud-env (2.1.1)
faraday (>= 1.0, < 3.a)
google-cloud-errors (1.3.1)
google-protobuf (3.25.2-x86_64-darwin)
google-protobuf (3.25.2-x86_64-linux)
googleapis-common-protos (1.4.0)
google-protobuf (~> 3.14)
googleapis-common-protos-types (~> 1.2)
grpc (~> 1.27)
googleapis-common-protos-types (1.11.0)
google-protobuf (3.25.3-x86_64-darwin)
google-protobuf (3.25.3-x86_64-linux)
googleapis-common-protos (1.5.0)
google-protobuf (~> 3.18)
googleapis-common-protos-types (~> 1.7)
grpc (~> 1.41)
googleapis-common-protos-types (1.13.0)
google-protobuf (~> 3.18)
googleauth (1.9.2)
googleauth (1.11.0)
faraday (>= 1.0, < 3.a)
google-cloud-env (~> 2.1)
jwt (>= 1.4, < 3.0)
multi_json (~> 1.11)
os (>= 0.9, < 2.0)
signet (>= 0.16, < 2.a)
grpc (1.61.0-x86_64-darwin)
grpc (1.62.0-x86_64-darwin)
google-protobuf (~> 3.25)
googleapis-common-protos-types (~> 1.0)
grpc (1.61.0-x86_64-linux)
grpc (1.62.0-x86_64-linux)
google-protobuf (~> 3.25)
googleapis-common-protos-types (~> 1.0)
haml (5.2.2)
temple (>= 0.8.0)
tilt
hashdiff (1.1.0)
htmlentities (4.3.4)
http-accept (1.7.0)
http-cookie (1.0.5)
domain_name (~> 0.5)
Expand All @@ -228,9 +233,11 @@ GEM
json-schema (2.8.1)
addressable (>= 2.4)
json_pure (2.7.1)
jwt (2.7.1)
jwt (2.8.0)
base64
kgio (2.11.4)
libxml-ruby (5.0.2)
link_header (0.0.8)
logger (1.6.0)
macaddr (1.7.2)
systemu (~> 2.6.5)
Expand All @@ -242,17 +249,17 @@ GEM
method_source (1.0.0)
mime-types (3.5.2)
mime-types-data (~> 3.2015)
mime-types-data (3.2023.1205)
mime-types-data (3.2024.0206)
mini_mime (1.1.5)
minitest (4.7.5)
minitest-stub_any_instance (1.0.3)
mlanett-redis-lock (0.2.7)
redis
multi_json (1.15.0)
multipart-post (2.3.0)
multipart-post (2.4.0)
mutex_m (0.2.0)
net-http-persistent (2.9.4)
net-imap (0.4.9.1)
net-imap (0.4.10)
date
net-protocol
net-pop (0.1.2)
Expand Down Expand Up @@ -288,7 +295,7 @@ GEM
rack (>= 0.4)
rack-cors (1.0.6)
rack (>= 1.6.0)
rack-mini-profiler (3.3.0)
rack-mini-profiler (3.3.1)
rack (>= 1.2.0)
rack-protection (1.5.5)
rack
Expand All @@ -297,8 +304,21 @@ GEM
rack-timeout (0.6.3)
raindrops (0.20.1)
rake (10.5.0)
rdf (1.0.8)
addressable (>= 2.2)
rdf (3.2.11)
link_header (~> 0.0, >= 0.0.8)
rdf-raptor (3.2.0)
ffi (~> 1.15)
rdf (~> 3.2)
rdf-rdfxml (3.2.2)
builder (~> 3.2)
htmlentities (~> 4.3)
rdf (~> 3.2)
rdf-xsd (~> 3.2)
rdf-vocab (3.2.7)
rdf (~> 3.2, >= 3.2.4)
rdf-xsd (3.2.1)
rdf (~> 3.2)
rexml (~> 3.2)
redcarpet (3.6.0)
redis (4.8.1)
redis-activesupport (5.3.0)
Expand All @@ -313,7 +333,7 @@ GEM
declarative (< 0.1.0)
trailblazer-option (>= 0.1.1, < 0.2.0)
uber (< 0.2.0)
request_store (1.5.1)
request_store (1.6.0)
rack (>= 1.4)
rest-client (2.1.0)
http-accept (>= 1.7.0, < 2.0)
Expand All @@ -330,7 +350,7 @@ GEM
rubyzip (2.3.2)
rufus-scheduler (2.0.24)
tzinfo (>= 0.3.22)
signet (0.18.0)
signet (0.19.0)
addressable (~> 2.8)
faraday (>= 0.17.5, < 3.a)
jwt (>= 1.5, < 3.0)
Expand Down Expand Up @@ -378,7 +398,7 @@ GEM
unicorn (>= 4, < 7)
uuid (2.3.9)
macaddr (~> 1.0)
webmock (3.19.1)
webmock (3.23.0)
addressable (>= 2.8.0)
crack (>= 0.3.2)
hashdiff (>= 0.4.0, < 2.0.0)
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2 changes: 1 addition & 1 deletion docker-compose.yml
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Expand Up @@ -90,7 +90,7 @@ services:
retries: 5

agraph-ut:
image: franzinc/agraph:v8.0.0.rc1
image: franzinc/agraph:v8.1.0
platform: linux/amd64
environment:
- AGRAPH_SUPER_USER=test
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