Bump the pip group across 1 directory with 3 updates

[dependabot]

Bumps the pip group with 3 updates in the /iris-variants-exploration directory: joblib, pillow and scikit-learn.

Updates joblib from 0.14.1 to 1.2.0

Changelog

Sourced from joblib's changelog.

Release 1.2.0

• Fix a security issue where eval(pre_dispatch) could potentially run arbitrary code. Now only basic numerics are supported. joblib/joblib#1327

• Make sure that joblib works even when multiprocessing is not available, for instance with Pyodide joblib/joblib#1256

• Avoid unnecessary warnings when workers and main process delete the temporary memmap folder contents concurrently. joblib/joblib#1263

• Fix memory alignment bug for pickles containing numpy arrays. This is especially important when loading the pickle with mmap_mode != None as the resulting numpy.memmap object would not be able to correct the misalignment without performing a memory copy. This bug would cause invalid computation and segmentation faults with native code that would directly access the underlying data buffer of a numpy array, for instance C/C++/Cython code compiled with older GCC versions or some old OpenBLAS written in platform specific assembly. joblib/joblib#1254

• Vendor cloudpickle 2.2.0 which adds support for PyPy 3.8+.

• Vendor loky 3.3.0 which fixes several bugs including:

  • robustly forcibly terminating worker processes in case of a crash (joblib/joblib#1269);

  • avoiding leaking worker processes in case of nested loky parallel calls;

  • reliability spawn the correct number of reusable workers.

Release 1.1.1

• Fix a security issue where eval(pre_dispatch) could potentially run arbitrary code. Now only basic numerics are supported. joblib/joblib#1327

Release 1.1.0

• Fix byte order inconsistency issue during deserialization using joblib.load

... (truncated)

Commits

• 5991350 Release 1.2.0
• 3fa2188 MAINT cleanup numpy warnings related to np.matrix in tests (#1340)
• cea26ff CI test the future loky-3.3.0 branch (#1338)
• 8aca6f4 MAINT: remove pytest.warns(None) warnings in pytest 7 (#1264)
• 067ed4f XFAIL test_child_raises_parent_exits_cleanly with multiprocessing (#1339)
• ac4ebd5 MAINT add back pytest warnings plugin (#1337)
• a23427d Test child raises parent exits cleanly more reliable on macos (#1335)
• ac09691 [MAINT] various test updates (#1334)
• 4a314b1 Vendor loky 3.2.0 (#1333)
• bdf47e9 Make test_parallel_with_interactively_defined_functions_default_backend timeo...
• Additional commits viewable in compare view

Updates pillow from 7.1.2 to 10.3.0

Release notes

Sourced from pillow's releases.

10.3.0

https://pillow.readthedocs.io/en/stable/releasenotes/10.3.0.html

Changes

• CVE-2024-28219: Use strncpy to avoid buffer overflow #7928 [@​hugovk]
• Use functools.lru_cache for hopper() #7912 [@​hugovk]
• Raise ValueError if seeking to greater than offset-sized integer in TIFF #7883 [@​radarhere]
• Improve speed of loading QOI images #7925 [@​radarhere]
• Added RGB to I;16N conversion #7920 [@​radarhere]
• Add --report argument to main.py to omit supported formats #7818 [@​nulano]
• Added RGB to I;16, I;16L and I;16B conversion #7918 [@​radarhere]
• Fix editable installation with custom build backend and configuration options #7658 [@​nulano]
• Fix putdata() for I;16N on big-endian #7209 [@​Yay295]
• Determine MPO size from markers, not EXIF data #7884 [@​radarhere]
• Improved conversion from RGB to RGBa, LA and La #7888 [@​radarhere]
• Support FITS images with GZIP_1 compression #7894 [@​radarhere]
• Use I;16 mode for 9-bit JPEG 2000 images #7900 [@​scaramallion]
• Raise ValueError if kmeans is negative #7891 [@​radarhere]
• Remove TIFF tag OSUBFILETYPE when saving using libtiff #7893 [@​radarhere]
• Raise ValueError for negative values when loading P1-P3 PPM images #7882 [@​radarhere]
• Added reading of JPEG2000 palettes #7870 [@​radarhere]
• Added alpha_quality argument when saving WebP images #7872 [@​radarhere]
• Fixed joined corners for ImageDraw rounded_rectangle() non-integer dimensions #7881 [@​radarhere]
• Removed Python and NumPy pinning on Cygwin #7880 [@​radarhere]
• Update UnidentifiedImageError and version imports #7644 [@​radarhere]
• Stop reading EPS image at EOF marker #7753 [@​radarhere]
• PSD layer co-ordinates may be negative #7706 [@​radarhere]
• Use subprocess with CREATE_NO_WINDOW flag in ImageShow WindowsViewer #7791 [@​radarhere]
• When saving GIF frame that restores to background color, do not fill identical pixels #7788 [@​radarhere]
• Fixed reading PNG iCCP compression method #7823 [@​radarhere]
• Allow writing IFDRational to UNDEFINED tag #7840 [@​radarhere]
• Fix logged tag name when loading Exif data #7842 [@​radarhere]
• Use maximum frame size in IHDR chunk when saving APNG images #7821 [@​radarhere]
• Prevent opening P TGA images without a palette #7797 [@​radarhere]
• Use palette when loading ICO images #7798 [@​radarhere]
• Use consistent arguments for load_read and load_seek #7713 [@​radarhere]
• Turn off nullability warnings for macOS SDK #7827 [@​radarhere]
• Fix shift-sign issue in Convert.c #7838 [@​r-barnes]
• winbuild: Refactor dependency versions into constants #7843 [@​hugovk]
• Build macOS arm64 wheels natively #7852 [@​radarhere]
• Fixed typo #7855 [@​radarhere]
• Open 16-bit grayscale PNGs as I;16 #7849 [@​radarhere]
• Handle truncated chunks at the end of PNG images #7709 [@​lajiyuan]
• Match mask size to pasted image size in GifImagePlugin #7779 [@​radarhere]
• Changed SupportsGetMesh protocol to be public #7841 [@​radarhere]
• Release GIL while calling WebPAnimDecoderGetNext #7782 [@​evanmiller]
• Fixed reading FLI/FLC images with a prefix chunk #7804 [@​twolife]
• Updated package name for Tidelift #7810 [@​radarhere]
• Removed unused code #7744 [@​radarhere]

... (truncated)

Changelog

Sourced from pillow's changelog.

10.3.0 (2024-04-01)

• CVE-2024-28219: Use strncpy to avoid buffer overflow #7928 [radarhere, hugovk]

• Deprecate eval(), replacing it with lambda_eval() and unsafe_eval() #7927 [radarhere, hugovk]

• Raise ValueError if seeking to greater than offset-sized integer in TIFF #7883 [radarhere]

• Add --report argument to __main__.py to omit supported formats #7818 [nulano, radarhere, hugovk]

• Added RGB to I;16, I;16L, I;16B and I;16N conversion #7918, #7920 [radarhere]

• Fix editable installation with custom build backend and configuration options #7658 [nulano, radarhere]

• Fix putdata() for I;16N on big-endian #7209 [Yay295, hugovk, radarhere]

• Determine MPO size from markers, not EXIF data #7884 [radarhere]

• Improved conversion from RGB to RGBa, LA and La #7888 [radarhere]

• Support FITS images with GZIP_1 compression #7894 [radarhere]

• Use I;16 mode for 9-bit JPEG 2000 images #7900 [scaramallion, radarhere]

• Raise ValueError if kmeans is negative #7891 [radarhere]

• Remove TIFF tag OSUBFILETYPE when saving using libtiff #7893 [radarhere]

• Raise ValueError for negative values when loading P1-P3 PPM images #7882 [radarhere]

• Added reading of JPEG2000 palettes #7870 [radarhere]

• Added alpha_quality argument when saving WebP images #7872 [radarhere]

... (truncated)

Commits

• 5c89d88 10.3.0 version bump
• 63cbfcf Update CHANGES.rst [ci skip]
• 2776126 Merge pull request #7928 from python-pillow/lcms
• aeb51cb Merge branch 'main' into lcms
• 5beb0b6 Update CHANGES.rst [ci skip]
• cac6ffa Merge pull request #7927 from python-pillow/imagemath
• f5eeeac Name as 'options' in lambda_eval and unsafe_eval, but '_dict' in deprecated eval
• facf3af Added release notes
• 2a93aba Use strncpy to avoid buffer overflow
• a670597 Update CHANGES.rst [ci skip]
• Additional commits viewable in compare view

Updates scikit-learn from 0.23.1 to 1.5.0

Release notes

Sourced from scikit-learn's releases.

Scikit-learn 1.5.0

We're happy to announce the 1.5.0 release.

You can read the release highlights under https://scikit-learn.org/stable/auto_examples/release_highlights/plot_release_highlights_1_5_0.html and the long version of the change log under https://scikit-learn.org/stable/whats_new/v1.5.html

This version supports Python versions 3.9 to 3.12.

You can upgrade with pip as usual:

pip install -U scikit-learn

The conda-forge builds can be installed using:

conda install -c conda-forge scikit-learn

Scikit-learn 1.4.2

We're happy to announce the 1.4.2 release.

This release only includes support for numpy 2.

This version supports Python versions 3.9 to 3.12.

You can upgrade with pip as usual:

pip install -U scikit-learn

Scikit-learn 1.4.1.post1

We're happy to announce the 1.4.1.post1 release.

You can see the changelog here: https://scikit-learn.org/stable/whats_new/v1.4.html#version-1-4-1-post1

This version supports Python versions 3.9 to 3.12.

You can upgrade with pip as usual:

pip install -U scikit-learn

The conda-forge builds can be installed using:

conda install -c conda-forge scikit-learn

... (truncated)

Commits

• b51d0c9 trigger whell builder [cd build]
• 919ae9b MAINT Reoder what's new for 1.5 (#29039)
• 0ac28ad DOC Release highlights 1.5 (#29007)
• 729b54d test py3.12 against numpy 2 [cd build]
• 1e50434 set version
• ffbe4ab DOC remove obsolete SVM example (#27108)
• 4647729 DOC Fix time complexity of MLP (#28592)
• 9bd7047 FIX convergence criterion of MeanShift (#28951)
• b79420f FIX add long long for int32/int64 windows compat in NumPy 2.0 (#29029)
• 37f544d DOC replace pandas with Polars in examples/gaussian_process/plot_gpr_co2.py (...
• Additional commits viewable in compare view

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