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@oicr-gsi

Genome Sequence Informatics

Repositories for OICR's Genome Sequence Informatics team

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  1. shesmu shesmu Public

    Decision-driven action launching system

    Java 8 4

  2. djerba djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    Python 9 6

  3. vidarr vidarr Public

    Analysis provenance tracking server

    Java 1 1

  4. data_release data_release Public

    Scripts for releasing data generated at OICR to stakeholders

    Python

Repositories

Showing 10 of 240 repositories
  • djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    oicr-gsi/djerba’s past year of commit activity
    Python 9 GPL-3.0 6 6 6 Updated Mar 17, 2025
  • variantMerging Public

    a workflow for combining variant calls from SNV analyses done with different callers

    oicr-gsi/variantMerging’s past year of commit activity
    Python 0 GPL-2.0 0 0 2 Updated Mar 17, 2025
  • xenoclassify-workflow Public

    workflow to classify short-read sequencing data generated from xenograft samples

    oicr-gsi/xenoclassify-workflow’s past year of commit activity
    WDL 0 0 0 0 Updated Mar 17, 2025
  • wgsMetrics Public

    Wrapper for picard WGSMetrics

    oicr-gsi/wgsMetrics’s past year of commit activity
    WDL 0 GPL-3.0 1 0 1 Updated Mar 17, 2025
  • virusbreakend Public

    OICR Genomics WDL for VIRUSBreakend

    oicr-gsi/virusbreakend’s past year of commit activity
    WDL 0 0 0 0 Updated Mar 17, 2025
  • sarsCoV2Analysis Public

    Classify samples as being either SARS-CoV-2 positive or negative, identify the strain of virus, and produce statistics about the mapping.

    oicr-gsi/sarsCoV2Analysis’s past year of commit activity
    WDL 0 0 0 1 Updated Mar 17, 2025
  • rnaSeqQC Public

    RNASeqQC workflow

    oicr-gsi/rnaSeqQC’s past year of commit activity
    WDL 1 GPL-3.0 1 0 1 Updated Mar 17, 2025
  • metagenomicReport Public
    oicr-gsi/metagenomicReport’s past year of commit activity
    WDL 0 MIT 0 0 0 Updated Mar 17, 2025
  • haplotypeCaller Public

    Haplotype caller WDL workflow for GATK4

    oicr-gsi/haplotypeCaller’s past year of commit activity
    WDL 1 1 0 1 Updated Mar 17, 2025
  • freec Public

    freec workflow - call CNV on your tumor wih optional normal

    oicr-gsi/freec’s past year of commit activity
    WDL 0 0 0 0 Updated Mar 17, 2025
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