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@oicr-gsi

Genome Sequence Informatics

Repositories for OICR's Genome Sequence Informatics team

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  1. shesmu shesmu Public

    Decision-driven action launching system

    Java 8 4

  2. djerba djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    Python 9 6

  3. vidarr vidarr Public

    Analysis provenance tracking server

    Java 1 1

  4. data_release data_release Public

    Scripts for releasing data generated at OICR to stakeholders

    Python

Repositories

Showing 10 of 242 repositories
  • cerberus Public

    File provenance library

    oicr-gsi/cerberus’s past year of commit activity
    Java 0 MIT 0 0 0 Updated Mar 21, 2025
  • shesmu Public

    Decision-driven action launching system

    oicr-gsi/shesmu’s past year of commit activity
    Java 8 MIT 4 0 2 Updated Mar 21, 2025
  • vidarr Public

    Analysis provenance tracking server

    oicr-gsi/vidarr’s past year of commit activity
    Java 1 MIT 1 0 2 Updated Mar 21, 2025
  • vardict Public
    oicr-gsi/vardict’s past year of commit activity
    WDL 0 0 0 0 Updated Mar 21, 2025
  • emSeqQc Public

    Runs bwa-meth followed by bamqc and methyldackel

    oicr-gsi/emSeqQc’s past year of commit activity
    WDL 1 0 0 0 Updated Mar 21, 2025
  • t1k Public
    oicr-gsi/t1k’s past year of commit activity
    WDL 0 0 0 1 Updated Mar 21, 2025
  • starFusion Public

    Workflow that takes a fastq pair or optionally a chimeric file from STAR and detects RNA-seq fusion events.

    oicr-gsi/starFusion’s past year of commit activity
    WDL 0 1 0 1 Updated Mar 21, 2025
  • mrdetect Public

    workflow to detect Minimal Residual disease with MRDetect

    oicr-gsi/mrdetect’s past year of commit activity
    WDL 0 0 1 0 Updated Mar 21, 2025
  • bamQC Public

    Workflow to run bam-qc-metrics (https://github.com/oicr-gsi/bam-qc-metrics)

    oicr-gsi/bamQC’s past year of commit activity
    WDL 1 2 1 1 Updated Mar 21, 2025
  • umiConsensus Public

    Workflow to generate consensus sequence bases on UMIs using consensusCruncher.

    oicr-gsi/umiConsensus’s past year of commit activity
    WDL 1 0 0 1 Updated Mar 21, 2025
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