Cosmetics

bvbabel/roi.py

@@ -2,6 +2,7 @@
 
 import numpy as np
 
+
 # =============================================================================
 def read_roi(filename):
     """Read BrainVoyager ROI file, FileVersion = 6.
@@ -32,7 +33,7 @@ def read_roi(filename):
             header[content[0]] = int(content[1])
         else:
             header[content[0]] = content[1]
-            
+
     # ROI data (x, y, z coordinates of voxels)
     count_roi = -1
     data_roi = list()
@@ -48,16 +49,16 @@ def read_roi(filename):
 
         elif content[0] == "FromSlice":
             data_roi[count_roi]["FromSlice"] = int(content[1])
-            
+
         elif content[0] == "Left":
             data_roi[count_roi]["Left"] = int(content[1])
-            
+
         elif content[0] == "Right":
             data_roi[count_roi]["Right"] = int(content[1])
-            
+
         elif content[0] == "Top":
             data_roi[count_roi]["Top"] = int(content[1])
-            
+
         elif content[0] == "Bottom":
             data_roi[count_roi]["Bottom"] = int(content[1])
 

bvbabel/sdm.py

@@ -139,6 +139,7 @@ def write_sdm(filename, header, data_sdm):
                 else:
                     f.write("\n")
 
+
 def create_sdm():
     """Create BrainVoyager SDM file with default values.
 

examples/read_write_fmr.py

@@ -2,13 +2,17 @@
 
 import os
 import bvbabel
+from pprint import pprint
 
-FILE = "/home/faruk/Documents/test_bvbabel/fmr/nifti_converted.fmr"
+FILE = "/home/faruk/Documents/test_bvbabel/S01_RUN_01_SCSTBL_3DMCTS_LTR_THPGLMF6c_TDTS2.0dp_FLIRT_TU.fmr"
 
 # =============================================================================
 # Load FMR (and its paired STC file)
 header, data = bvbabel.fmr.read_fmr(FILE)
 
+# See header information
+pprint(header)
+
 # Save FMR (and its paired STC file)
 basename = FILE.split(os.extsep, 1)[0]
 outname = "{}_bvbabel.fmr".format(basename)