removed warnings and updated for amended dataset #121
Workflow file for this run
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Linux test | |
| on: push | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: [3.8] | |
| steps: | |
| - name: Checkout github repo | |
| uses: actions/checkout@v2 | |
| - name: Cache conda | |
| uses: actions/cache@v2 | |
| env: | |
| cache-name: cache-conda-env | |
| with: | |
| path: ~/conda_pkgs_dir | |
| key: ${{ runner.os }}-conda-${{ env.cache-name }}-${{ hashFiles('environment.yml') }} | |
| - name: Install package dependencies with setup-miniconda@v2 | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| miniforge-variant: Mambaforge | |
| channels: conda-forge | |
| channel-priority: true | |
| activate-environment: geoapis | |
| environment-file: environment.yml | |
| auto-activate-base: false | |
| use-only-tar-bz2: true # IMPORTANT: This needs to be set for caching to work properly! | |
| - run: | | |
| conda info | |
| conda list | |
| conda config --show-sources | |
| conda config --show | |
| printenv | sort | |
| - name: Install test dependencies | |
| run: | | |
| mamba install flake8 pytest | |
| - name: Create .env file with API keys | |
| env: | |
| ENV_BASE64: ${{ secrets.ENV_BASE64 }} | |
| run: | | |
| echo import .env file contents stored in a GitHub secret and regenerate the expected .env file | |
| echo $ENV_BASE64 | base64 -d > .env | |
| - name: Run lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Run tests with pytest | |
| run: | | |
| pytest |