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MNT: Coverage updates #36

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merged 4 commits into from
Mar 23, 2024
Merged

MNT: Coverage updates #36

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2ebce2b
MNT: Do not omit tests from coverage
effigies Mar 23, 2024
cc8a278
MNT: Set fallback __version__, ignore coverage
effigies Mar 23, 2024
374bc1e
CI: Do not submit etelemetry during tests
effigies Mar 23, 2024
4dd1221
CI: Update pytest invocation to get test coverage
effigies Mar 23, 2024
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6 changes: 5 additions & 1 deletion .coveragerc
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Original file line number Diff line number Diff line change
Expand Up @@ -2,4 +2,8 @@
branch = True
omit =
*/_version.py
*/tests/*

[paths]
source =
pydra/tasks
/**/pydra/tasks
5 changes: 3 additions & 2 deletions .github/workflows/pythonpackage.yml
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Expand Up @@ -7,6 +7,7 @@ name: Python package
env:
SUBPACKAGE: nipype1
FSLCONDA: https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/public/
NO_ET: 1 # etelemetry causes order-of-magnitude slowdowns

on:
push:
Expand Down Expand Up @@ -86,8 +87,8 @@ jobs:
python -c "import pydra as m; print(f'{m.__name__} {m.__version__} @ {m.__file__}')"
- name: Test with pytest
run: |
pytest -sv --doctest-modules pydra/tasks/$SUBPACKAGE \
--cov pydra.tasks.$SUBPACKAGE --cov-report xml
pytest -sv --doctest-modules --pyargs pydra.tasks.$SUBPACKAGE \
--cov pydra.tasks.$SUBPACKAGE --cov-report xml --cov-report term-missing
- uses: codecov/codecov-action@v4
if: ${{ always() }}
with:
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3 changes: 0 additions & 3 deletions codecov.yml
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@@ -1,10 +1,7 @@
coverage:
range: "50...100"
ignore: # files and folders that will be removed during processing
- "**/tests"
- "**/_version.py"
- "setup.py"
- "versioneer.py"
status:
project:
default:
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4 changes: 2 additions & 2 deletions pydra/tasks/nipype1/__init__.py
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Expand Up @@ -5,8 +5,8 @@

try:
from ._version import __version__
except ImportError:
pass
except ImportError: # pragma: no cover
__version__ = "0+unknown"

from .utils import Nipype1Task

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