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added conda install to ci-cd
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tclose committed Mar 22, 2024
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Showing 1 changed file with 19 additions and 126 deletions.
145 changes: 19 additions & 126 deletions .github/workflows/ci-cd.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -129,134 +129,27 @@ jobs:
auto-activate-base: true
activate-environment: ""

- name: Install fsl Package
- name: Install fsl Packages
run: >-
conda install -c conda-forge -c https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/public/
ciftilib
cli11
elc
fsl-add_module
fsl-armawrap
fsl-asl_mfree
fsl-avwutils
fsl-base
fsl-basil
fsl-basisfield
fsl-baycest
fsl-bet2
fsl-bianca
fsl-biancadata
fsl-bint
fsl-cluster
fsl-copain
fsl-cprob
fsl-cudabasisfield-cuda-10
fsl-cudimot
fsl-data_atlases
fsl-data_atlases_xtract
fsl-data_first_models_317_bin
fsl-data_first_models_336_bin
fsl-data_linearmni
fsl-data_omm
fsl-data_possum
fsl-data_standard
fsl-deface
fsl-discreteopt
fsl-dpm
fsl-dwssfp
fsl-easyfeat
fsl-eddy
fsl-eddy-cuda-10
fsl-eddy_qc
fsl-fabber_core
fsl-fabber_models_asl
fsl-fabber_models_cest
fsl-fabber_models_dce
fsl-fabber_models_dsc
fsl-fabber_models_dualecho
fsl-fabber_models_dwi
fsl-fabber_models_pet
fsl-fabber_models_qbold
fsl-fabber_models_t1
fsl-fast4
fsl-fastpdlib
fsl-fdt
fsl-fdt-cuda-10
fsl-feat5
fsl-film
fsl-filmbabe
fsl-first
fsl-first_lib
fsl-flameo
fsl-flirt
fsl-fnirt
fsl-fugue
fsl-get_standard
fsl-giftiio
fsl-gps
fsl-gradunwarp
fsl-gui-bet
fsl-gui-desktop
fsl-installer
fsl-lesions
fsl-libgdc
fsl-libmeshutils
fsl-libvis
fsl-load_dicom
fsl-mcflirt
fsl-melodic
fsl-meshclass
fsl-misc_c
fsl-misc_scripts
fsl-misc_tcl
fsl-miscmaths
fsl-miscvis
fsl-mist
fsl-mm
fsl-mmorf-cuda-10
fsl-msm
fsl-msmreglib
fsl-mvdisc
fsl-nets
fsl-newimage
fsl-newmesh
fsl-newnifti
fsl-newran
fsl-oxford_asl
fsl-possum
fsl-ptx2
fsl-ptx2-cuda-10
fsl-pyfeeds
fsl-pyfeeds-tests
fsl-pyfix
fsl-qboot
fsl-randomise
fsl-relax
fsl-shapemodel
fsl-siena
fsl-slicetimer
fsl-sub
fsl-sub-plugin-sge
fsl-sub-plugin-slurm
fsl-surface
fsl-susan
fsl-swe
fsl-tbss
fsl-tirl
fsl-topup
fsl-utils
fsl-vbm
fsl-verbena
fsl-vtkio
fsl-warpfns
fsl-wire
fsl-xtract
fsl-xtract_data
fsl-znzlib
fsl_mrs
fsl_sub
fsl_sub_plugin_sge
fsl_sub_plugin_slurm
ciftilib cli11 elc fsl-add_module fsl-armawrap fsl-asl_mfree fsl-avwutils fsl-base
fsl-basil fsl-basisfield fsl-baycest fsl-bet2 fsl-bianca fsl-biancadata fsl-bint
fsl-cluster fsl-copain fsl-cprob fsl-cudabasisfield-cuda-10 fsl-cudimot fsl-data_atlases
fsl-data_atlases_xtract fsl-data_first_models_317_bin fsl-data_first_models_336_bin fsl-data_linearmni
fsl-data_omm fsl-data_possum fsl-data_standard fsl-deface fsl-discreteopt fsl-dpm fsl-dwssfp
fsl-easyfeat fsl-eddy fsl-eddy-cuda-10 fsl-eddy_qc fsl-fabber_core fsl-fabber_models_asl fsl-fabber_models_cest
fsl-fabber_models_dce fsl-fabber_models_dsc fsl-fabber_models_dualecho fsl-fabber_models_dwi
fsl-fabber_models_pet fsl-fabber_models_qbold fsl-fabber_models_t1 fsl-fast4 fsl-fastpdlib
fsl-fdt fsl-fdt-cuda-10 fsl-feat5 fsl-film fsl-filmbabe fsl-first fsl-first_lib fsl-flameo
fsl-flirt fsl-fnirt fsl-fugue fsl-get_standard fsl-giftiio fsl-gps fsl-gradunwarp fsl-gui-bet
fsl-gui-desktop fsl-installer fsl-lesions fsl-libgdc fsl-libmeshutils fsl-libvis fsl-load_dicom fsl-mcflirt
fsl-melodic fsl-meshclass fsl-misc_c fsl-misc_scripts fsl-misc_tcl fsl-miscmaths fsl-miscvis
fsl-mist fsl-mm fsl-mmorf-cuda-10 fsl-msm fsl-msmreglib fsl-mvdisc fsl-nets fsl-newimage
fsl-newmesh fsl-newnifti fsl-newran fsl-oxford_asl fsl-possum fsl-ptx2 fsl-ptx2-cuda-10 fsl-pyfeeds
fsl-pyfeeds-tests fsl-pyfix fsl-qboot fsl-randomise fsl-relax fsl-shapemodel fsl-siena fsl-slicetimer
fsl-sub fsl-sub-plugin-sge fsl-sub-plugin-slurm fsl-surface fsl-susan fsl-swe fsl-tbss fsl-tirl
fsl-topup fsl-utils fsl-vbm fsl-verbena fsl-vtkio fsl-warpfns fsl-wire fsl-xtract fsl-xtract_data
fsl-znzlib fsl_mrs fsl_sub fsl_sub_plugin_sge fsl_sub_plugin_slurm
- name: Download tasks converted from Nipype
uses: actions/download-artifact@v3
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