[pre-commit.ci] pre-commit autoupdate #162
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| name: fsl_docker | |
| on: [push, pull_request] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| env: | |
| DOCKER_IMAGE: djarecka/fsl_py:6.0.4 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| lfs: true | |
| - name: Pull docker image | |
| run: | | |
| docker pull $DOCKER_IMAGE | |
| # Have image running in background | |
| docker run `bash <(curl -s https://codecov.io/env)` -itd --name fsl_cont -v `pwd`:/pydra_fsl $DOCKER_IMAGE | |
| - name: Updating pydra | |
| run: docker exec fsl_cont bash -c "pip install https://github.com/nipype/pydra/tarball/master && python -c 'import pydra; print(pydra.__version__)'" | |
| - name: Run pytest | |
| run: docker exec fsl_cont bash -c "pytest --color=yes -vs /pydra_fsl/pydra/tasks/fsl" | |
| - name: removing container | |
| run: docker rm -f fsl_cont |