added increment_version_tool and edited NOTICE file

.github/workflows/ci-cd.yaml

@@ -63,7 +63,7 @@ jobs:
     - name: Checkout
       uses: actions/checkout@v4
 
-    - name: Revert version to most recent version tag on upstream update
+    - name: Revert version to most recent version tag on Nipype or Nipype2Pydra update
       if: github.event_name == 'repository_dispatch'
       run: git checkout $(git tag -l | grep 'v.*' | tail -n 1 | awk -F post '{print $1}')
 

NOTICE

@@ -0,0 +1,9 @@
+Pydra-Ants
+Copyright 2024 Pydra Development Team
+
+The ApplyTransforms, BiasCorrection, CreateJacobianDeterminantImage and Registration
+task interfaces were copied from the https://github.com/ghisvail/pydra-ants repository.
+
+The basis for the remaining task interfaces defined in this package were semi-automatically
+converted from Nipype interfaces (https://github.com/nipy/nipype) using the Nipype2Pydra
+tool (https://github.com/nipype/nipype2pydra).

pyproject.toml

@@ -12,7 +12,7 @@ dependencies = [
     "fileformats >=0.8.3",
     "fileformats-datascience >=0.1",
     "fileformats-medimage >=0.4.1",
-    "fileformats-medimage-ants"
+#    "fileformats-medimage-ants"
 ]
 license = {file = "LICENSE"}
 authors = [{name = "Nipype developers", email = "[email protected]"}]
@@ -54,7 +54,7 @@ test = [
     "fileformats-extras",
     "fileformats-datascience-extras",
     "fileformats-medimage-extras",
-    "fileformats-medimage-ants-extras"
+#    "fileformats-medimage-ants-extras"
 ]
 
 [tool.hatch.version]

tools/increment_tool_version.py

@@ -0,0 +1,69 @@
+#!/usr/bin/env python3
+from pathlib import Path
+import inspect
+from importlib import import_module
+import click
+from looseversion import LooseVersion
+from pydra.engine.core import TaskBase
+
+
+PKG_DIR = Path(__file__).parent.parent
+TASKS_DIR = PKG_DIR / "pydra" / "tasks" / "ants"
+VERSION_GRANULARITY = (
+    2  # Number of version parts to include: 1 - major, 2 - minor, 3 - micro
+)
+
+
+@click.command(
+    help="""Increment the latest version or create a new sub-package for interfaces for
+a new release of AFNI depending on whether one already exists or not.
+
+NEW_VERSION the version of AFNI to create a new sub-package for
+"""
+)
+@click.argument("new_version", type=LooseVersion)
+def increment_tool_version(new_version: LooseVersion):
+
+    # Get the name of the sub-package, e.g. "v2_5"
+    new_subpkg_name = "_".join(str(p) for p in new_version.version[:VERSION_GRANULARITY])  # type: ignore
+    if not new_subpkg_name.startswith("v"):
+        new_subpkg_name = "v" + new_subpkg_name
+    sub_pkg_dir = TASKS_DIR / new_subpkg_name
+    if not sub_pkg_dir.exists():
+
+        prev_version = sorted(
+            (
+                p.name
+                for p in TASKS_DIR.iterdir()
+                if p.is_dir() and p.name.startswith("v")
+            ),
+            key=lambda x: LooseVersion(".".join(x.split("_"))).version,
+        )[-1]
+        prev_ver_mod = import_module(f"pydra.tasks.ants.{prev_version}")
+
+        mod_attrs = [getattr(prev_ver_mod, a) for a in dir(prev_ver_mod)]
+        task_classes = [
+            a for a in mod_attrs if inspect.isclass(a) and issubclass(a, TaskBase)
+        ]
+
+        code_str = (
+            f"from pydra.tasks.ants import {prev_version}\n"
+            "from . import _tool_version\n"
+        )
+
+        for task_cls in task_classes:
+            code_str += (
+                f"\n\nclass {task_cls.__name__}({prev_version}.{task_cls.__name__}):\n"
+                "    TOOL_VERSION = _tool_version.TOOL_VERSION\n"
+            )
+
+        sub_pkg_dir.mkdir(exist_ok=True)
+        with open(sub_pkg_dir / "__init__.py", "w") as f:
+            f.write(code_str)
+
+    with open(sub_pkg_dir / "_tool_version.py", "w") as f:
+        f.write(f'TOOL_VERSION = "{new_version}"\n')
+
+
+if __name__ == "__main__":
+    increment_tool_version()

tools/requirements.txt

@@ -0,0 +1,3 @@
+click >= 8.1.3
+looseversion >= 1.1
+pydra >= 0.23