STY: Apply ruff/refurb rules

[DimitriPapadopoulos]

Summary

Partially apply FURB rules, where they make sense, except FURB101 (26 errors), FURB103 (21 errors), FURB113 (2 errors), FURB118 (3 errors), FURB140 (2 errors), FURB171 (25 errors).

List of changes proposed in this PR (pull-request)

• STY: Apply ruff/refurb rule FURB113
  FURB113 Use list.extend(...) instead of repeatedly calling list.append()
• STY: Apply ruff/refurb rule FURB129
  FURB129 Instead of calling readlines(), iterate over file object directly
• STY: Apply ruff/refurb rule FURB136
  FURB136 Replace 20 if len(nodiffidx) >= 20 else len(nodiffidx) with min(20, len(nodiffidx))
• STY: Apply ruff/refurb rule FURB148
  FURB148 enumerate index is unused, use for x in y instead
• STY: Apply ruff/refurb rule FURB167
  FURB167 Use of regular expression alias re.X
  FURB167 Use of regular expression alias re.M

[codecov]

Codecov Report

Attention: Patch coverage is 21.27660% with 37 lines in your changes are missing coverage. Please review.

Project coverage is 70.90%. Comparing base (d52a62d) to head (7774e3f).

❗ Current head 7774e3f differs from pull request most recent head cfcbc6d. Consider uploading reports for the commit cfcbc6d to get more accurate results

Files	Patch %	Lines
nipype/interfaces/fsl/model.py	0.00%	21 Missing and 5 partials ⚠️
nipype/interfaces/io.py	25.00%	3 Missing ⚠️
nipype/algorithms/misc.py	0.00%	1 Missing ⚠️
nipype/interfaces/cmtk/nx.py	0.00%	1 Missing ⚠️
nipype/interfaces/dipy/reconstruction.py	0.00%	1 Missing ⚠️
nipype/interfaces/elastix/registration.py	0.00%	0 Missing and 1 partial ⚠️
nipype/interfaces/nipy/preprocess.py	0.00%	1 Missing ⚠️
nipype/pipeline/engine/workflows.py	85.71%	1 Missing ⚠️
nipype/pipeline/plugins/somaflow.py	0.00%	1 Missing ⚠️
nipype/sphinxext/plot_workflow.py	0.00%	1 Missing ⚠️

Additional details and impacted files

@@           Coverage Diff           @@
##           master    #3648   +/-   ##
=======================================
  Coverage   70.90%   70.90%           
=======================================
  Files        1277     1277           
  Lines       59477    59455   -22     
  Branches     9819     9824    +5     
=======================================
- Hits        42172    42157   -15     
+ Misses      16134    16122   -12     
- Partials     1171     1176    +5     

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[effigies]

Looks good. A couple small suggestions, but this could go in as-is.