Merge branch 'master' of https://github.com/nion-software/nionui-tool #94
Workflow file for this run
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| name: Build | |
| on: | |
| push: | |
| branches: [ master ] | |
| tags: '*' | |
| pull_request: | |
| branches: [ master ] | |
| env: | |
| tool-id: nionswift-tool | |
| tool-package: nionswift | |
| tool-exe: nionswift --app | |
| jobs: | |
| build_linux: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-20.04] | |
| python-version: ["3.11", "3.12", "3.13"] | |
| qt-version: ["6.8.1"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Display Python version | |
| shell: bash | |
| run: | | |
| python -c "import sys; print(sys.version)" | |
| python -c "import sys; print(sys.executable)" | |
| - name: Install Qt | |
| uses: jurplel/install-qt-action@v3 | |
| with: | |
| version: ${{ matrix.qt-version }} | |
| host: 'linux' | |
| target: 'desktop' | |
| arch: 'linux_gcc_64' | |
| - name: Build | |
| shell: bash | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install setuptools --upgrade | |
| python -m pip install packaging build cibuildwheel | |
| pushd launcher | |
| PYTHON=`python -c "import sys; print(sys.executable, end='')"` | |
| cmake CMakeLists.txt -DGIT_REPO=${{ github.repository }} -DGIT_REF=${{ github.ref }} -DGIT_SHA=${{ github.sha }} | |
| cmake --build . --config Release | |
| mkdir -p linux | |
| mv build linux/x64 | |
| popd | |
| cp ../Qt/${{ matrix.qt-version }}/gcc_64/lib/libQt6Core.so.6 launcher/linux/x64 | |
| cp ../Qt/${{ matrix.qt-version }}/gcc_64/lib/libQt6DBus.so.6 launcher/linux/x64 | |
| cp ../Qt/${{ matrix.qt-version }}/gcc_64/lib/libQt6Gui.so.6 launcher/linux/x64 | |
| cp ../Qt/${{ matrix.qt-version }}/gcc_64/lib/libQt6OpenGL.so.6 launcher/linux/x64 | |
| cp ../Qt/${{ matrix.qt-version }}/gcc_64/lib/libQt6Widgets.so.6 launcher/linux/x64 | |
| cp ../Qt/${{ matrix.qt-version }}/gcc_64/lib/libQt6XcbQpa.so.6 launcher/linux/x64 | |
| cp ../Qt/${{ matrix.qt-version }}/gcc_64/lib/libicui18n.so.73 launcher/linux/x64 | |
| cp ../Qt/${{ matrix.qt-version }}/gcc_64/lib/libicudata.so.73 launcher/linux/x64 | |
| cp ../Qt/${{ matrix.qt-version }}/gcc_64/lib/libicuuc.so.73 launcher/linux/x64 | |
| mkdir -p launcher/linux/x64/plugins/platforms | |
| mkdir -p launcher/linux/x64/plugins/imageformats | |
| cp ../Qt/${{ matrix.qt-version }}/gcc_64/plugins/platforms/libqxcb.so launcher/linux/x64/plugins/platforms | |
| cp ../Qt/${{ matrix.qt-version }}/gcc_64/plugins/imageformats/libq* launcher/linux/x64/plugins/imageformats | |
| rm launcher/linux/x64/plugins/imageformats/libqsvg.so | |
| chrpath -r "\$ORIGIN" launcher/linux/x64/libicu*.so.73 | |
| chrpath -r "\$ORIGIN/../.." launcher/linux/x64/plugins/platforms/libqxcb.so | |
| chrpath -r "\$ORIGIN/../.." launcher/linux/x64/plugins/imageformats/*.so | |
| printf "[Paths]\nPrefix=.\nPlugins=plugins\n" > launcher/linux/x64/qt.conf | |
| python -m build . | |
| - name: Set up Miniconda ${{ matrix.python-version }} | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| python-version: "3.11" | |
| miniconda-version: "latest" | |
| - name: Build Conda Package | |
| shell: bash -l {0} | |
| run: | | |
| python -c "import sys; print(sys.version)" | |
| python -c "import sys; print(sys.executable)" | |
| conda update --all -q -y | |
| conda install -q conda-build -y | |
| conda build -q --python ${{ matrix.python-version }} ./.github/workflows/recipe | |
| OUT_FILE=$(conda build --python ${{ matrix.python-version }} --output ./.github/workflows/recipe) | |
| mv $OUT_FILE dist | |
| - name: Upload Wheel | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: ${{ env.tool-id }}-linux-whl-${{ matrix.python-version }} | |
| path: dist/*.whl | |
| - name: Upload Conda Package | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: ${{ env.tool-id }}-linux-conda-${{ matrix.python-version }} | |
| path: dist/*.tar.bz2 | |
| build_macos: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [macos-13] | |
| python-version: ["3.11", "3.12", "3.13"] | |
| architecture: [x86_64] | |
| qt-version: ["6.8.1"] | |
| include: | |
| - os: macos-14 | |
| python-version: "3.12" | |
| architecture: arm64 | |
| qt-version: "6.8.1" | |
| - os: macos-14 | |
| python-version: "3.13" | |
| architecture: arm64 | |
| qt-version: "6.8.1" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Display Python version | |
| shell: bash | |
| run: | | |
| python -c "import sys; print(sys.version)" | |
| python -c "import sys; print(sys.executable)" | |
| - name: Install Qt | |
| uses: jurplel/install-qt-action@v3 | |
| with: | |
| version: ${{ matrix.qt-version }} | |
| host: 'mac' | |
| target: 'desktop' | |
| - name: Build | |
| shell: bash | |
| env: | |
| MACOS_CERTIFICATE: ${{ secrets.MACOS_CERTIFICATE }} | |
| MACOS_CERTIFICATE_PWD: ${{ secrets.MACOS_CERTIFICATE_PWD }} | |
| MACOS_KEYCHAIN_PASSWORD: ${{ secrets.MACOS_KEYCHAIN_PASSWORD }} | |
| MACOS_DEVELOPER_TEAM_ID: ${{ secrets.MACOS_DEVELOPER_TEAM_ID }} | |
| run: | | |
| APPNAME="Nion Swift" | |
| python -m pip install --upgrade pip | |
| python -m pip install --upgrade setuptools | |
| python -m pip install packaging build cibuildwheel | |
| pushd launcher | |
| PYTHON=`python -c "import sys; print(sys.executable, end='')"` | |
| cmake CMakeLists.txt -DGIT_REPO=${{ github.repository }} -DGIT_REF=${{ github.ref }} -DGIT_SHA=${{ github.sha }} | |
| cmake --build . --config Release | |
| pushd build | |
| echo -n "$MACOS_CERTIFICATE" | base64 -d > certificate.p12 | |
| echo "Create keychain" | |
| security create-keychain -p "$MACOS_KEYCHAIN_PASSWORD" build.keychain | |
| echo "Set default keychain" | |
| security default-keychain -s build.keychain | |
| echo "Unlock keychain" | |
| security unlock-keychain -p "$MACOS_KEYCHAIN_PASSWORD" build.keychain | |
| echo "Import certificate (disabled)" | |
| security import certificate.p12 -k build.keychain -P "$MACOS_CERTIFICATE_PWD" -T /usr/bin/codesign | |
| echo "Find identity" | |
| security find-identity -v | |
| echo "Set key partition list (avoids dialog)" | |
| security set-key-partition-list -S apple-tool:,apple:,codesign: -s -k "$MACOS_KEYCHAIN_PASSWORD" build.keychain | |
| echo "Code sign" | |
| # remove files that will not be signed and have can be regenerated | |
| find "$APPNAME.app" -name "__pycache__" -exec rm -rf {} \; -prune | |
| find "$APPNAME.app" -name "*.pyc" -exec rm -rf {} \; -prune | |
| # sign files from the inside out. first ensure that dylibs are executable. then find all executable files | |
| # and sign them. then sign apps within frameworks. then sign frameworks. then sign the app itself. | |
| codesign --remove-signature --deep --force "$APPNAME.app/Contents/MacOS/$APPNAME" | |
| find "$APPNAME.app" -name "*.dylib" -exec chmod +x {} \; | |
| find "$APPNAME.app" -type f -perm +111 -and -not -name "*.py" -exec /usr/bin/codesign -s "$MACOS_DEVELOPER_TEAM_ID" {} --options runtime --timestamp --deep --force --verbose \; | |
| find "$APPNAME.app/Contents/Frameworks" -name "*.app" -exec /usr/bin/codesign -s "$MACOS_DEVELOPER_TEAM_ID" {} --options runtime --timestamp --deep --force --verbose \; | |
| find "$APPNAME.app" -name "*.framework" -exec /usr/bin/codesign -s "$MACOS_DEVELOPER_TEAM_ID" {} --options runtime --timestamp --deep --force --verbose \; | |
| /usr/bin/codesign -s "$MACOS_DEVELOPER_TEAM_ID" "$APPNAME.app" --entitlements ../entitlements.xml --options runtime --timestamp --deep --force --verbose | |
| rm certificate.p12 | |
| popd | |
| mkdir -p build/Release | |
| mv build/*.app build/Release | |
| tar -czf "build/Release/$APPNAME.app.tar.gz" "build/Release/$APPNAME.app" | |
| popd | |
| PYTHON_VERSION_COMPRESSED=$(echo "${{ matrix.python-version }}" | sed 's/\.//g') | |
| export CIBW_ARCHS_MACOS="${{ matrix.architecture }}" | |
| export CIBW_BUILD=cp$PYTHON_VERSION_COMPRESSED-macosx_${{ matrix.architecture }} | |
| export CIBW_REPAIR_WHEEL_COMMAND="" | |
| python -m cibuildwheel --output-dir dist | |
| - name: Upload Wheel | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: ${{ env.tool-id }}-macos-whl-${{ matrix.architecture }}-${{ matrix.python-version }} | |
| path: dist/*.whl | |
| - name: Set up Miniconda ${{ matrix.python-version }} | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| python-version: "3.11" | |
| miniconda-version: "latest" | |
| architecture: ${{ matrix.architecture }} | |
| - name: Build Conda Package | |
| shell: bash -l {0} | |
| run: | | |
| python -c "import sys; print(sys.version)" | |
| python -c "import sys; print(sys.executable)" | |
| conda update --all -q -y | |
| conda install -q conda-build -y | |
| conda build -q --python ${{ matrix.python-version }} ./.github/workflows/recipe | |
| OUT_FILE=$(conda build --python ${{ matrix.python-version }} --output ./.github/workflows/recipe) | |
| mv $OUT_FILE dist | |
| - name: Upload Conda Package | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: ${{ env.tool-id }}-macos-conda-${{ matrix.architecture }}-${{ matrix.python-version }} | |
| path: dist/*.tar.bz2 | |
| build_win: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [windows-2019] | |
| python-version: ["3.11", "3.12", "3.13"] | |
| qt-version: ["6.8.1"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Display Python version | |
| shell: pwsh | |
| run: | | |
| python -c "import sys; print(sys.version)" | |
| python -c "import sys; print(sys.executable)" | |
| - name: Install Qt | |
| uses: jurplel/install-qt-action@v3 | |
| with: | |
| version: ${{ matrix.qt-version }} | |
| host: 'windows' | |
| target: 'desktop' | |
| arch: 'win64_msvc2022_64' | |
| - name: Build | |
| shell: pwsh | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install --upgrade setuptools | |
| python -m pip install packaging build cibuildwheel | |
| pushd launcher | |
| $PYTHON_EXEC = python -c "import sys; print(sys.executable, end='')" | |
| cmake CMakeLists.txt -DGIT_REPO=${{ github.repository }} -DGIT_REF=${{ github.ref }} -DGIT_SHA=${{ github.sha }} | |
| cmake --build . --config Release | |
| Get-ChildItem -Include *.pdb -Recurse | foreach { $_.Delete() } | |
| Get-ChildItem build\Release\imageformats -Include *d.dll -Recurse | foreach { $_.Delete() } | |
| Rename-Item -Path build\Release\NionSwiftLauncher.exe -NewName NionSwift.exe | |
| Remove-Item -Recurse -Force x64\* | |
| Move-Item -Path build\Release -Destination x64 | |
| popd | |
| python -m build . | |
| - name: Set up Miniconda ${{ matrix.python-version }} | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| python-version: "3.11" | |
| miniconda-version: "latest" | |
| - name: Build Conda Package | |
| shell: bash -l {0} | |
| run: | | |
| python -c "import sys; print(sys.version)" | |
| python -c "import sys; print(sys.executable)" | |
| conda update --all -q -y | |
| conda install -q conda-build -y | |
| conda build -q --python ${{ matrix.python-version }} ./.github/workflows/recipe | |
| OUT_FILE=$(conda build --python ${{ matrix.python-version }} --output ./.github/workflows/recipe) | |
| mv $OUT_FILE dist | |
| - name: Upload Wheel | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: ${{ env.tool-id }}-win-whl-${{ matrix.python-version }} | |
| path: dist/*.whl | |
| - name: Upload Conda Package | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: ${{ env.tool-id }}-win-conda-${{ matrix.python-version }} | |
| path: dist/*.tar.bz2 | |
| test_linux: | |
| needs: build_linux | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-20.04, ubuntu-22.04, ubuntu-24.04] | |
| python-version: ["3.11", "3.12", "3.13"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Download Wheel | |
| uses: actions/download-artifact@v4 | |
| id: download_wheel | |
| with: | |
| name: ${{ env.tool-id }}-linux-whl-${{ matrix.python-version }} | |
| path: downloads | |
| - name: Download Conda | |
| uses: actions/download-artifact@v4 | |
| id: download_conda | |
| with: | |
| name: ${{ env.tool-id }}-linux-conda-${{ matrix.python-version }} | |
| path: conda_downloads | |
| - name: Set up Python ${{ matrix.python-version }} with official build | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Virtual screen | |
| shell: bash | |
| run: | | |
| # update package list. see https://github.com/actions/runner-images/issues/10785#issuecomment-2420741561 | |
| sudo apt-get update | |
| sudo apt-get install xvfb -y | |
| # libopengl0: see https://bugreports.qt.io/browse/QTBUG-89754 | |
| sudo apt-get install libopengl0 -y | |
| # see https://doc.qt.io/qt-6/linux-requirements.html | |
| sudo apt-get install libegl1 libfontconfig1 libfreetype6 libxcb1 libxcb-glx0 libxcb-keysyms1 libxcb-image0 libxcb-shm0 libxcb-icccm4 libxcb-xfixes0 libxcb-shape0 libxcb-randr0 libxcb-render-util0 libxcb-xinerama0 libxcb-xkb1 libxkbcommon-x11-0 libxcb-sync1 libxcb-cursor0 -y | |
| # sudo apt-get install libx11 libx11-xcb libxext libxfixes libxi libxrender libxcb-sync libxcb-util libxkbcommon | |
| - name: Test system Python installed with official build with virtual environment | |
| shell: bash | |
| run: | | |
| sudo apt update | |
| python -m pip install --upgrade pip | |
| SYSTEM_PYTHON_EXE=python | |
| $SYSTEM_PYTHON_EXE -m venv test_venv | |
| source test_venv/bin/activate | |
| python -m pip install --upgrade pip | |
| python -m pip install setuptools | |
| # until numpy 2 compatible versions are on nion channel, use direct source | |
| pip install git+https://github.com/nion-software/nionutils.git#egg=nionutils | |
| pip install git+https://github.com/nion-software/nionui.git#egg=nionui | |
| pip install git+https://github.com/nion-software/niondata.git#egg=niondata | |
| pip install git+https://github.com/nion-software/nionswift-io.git#egg=nionswift-io | |
| pip install git+https://github.com/nion-software/nionswift.git#egg=nionswift | |
| # python -m pip install ${{ env.tool-package }} | |
| python -m pip install ${{steps.download_wheel.outputs.download-path}}/*.whl | |
| python -m pip install numpy scipy h5py | |
| pushd nionui_app_test | |
| python -m pip install . | |
| popd | |
| echo "Running test... ${{ env.tool-exe }}" | |
| xvfb-run -a ${{ env.tool-exe }} nionui_app.test_ack | |
| sleep 5 | |
| xvfb-run -a ${{ env.tool-exe }} nionui_app.test_ack | grep ACK | |
| sleep 5 | |
| deactivate | |
| - name: Set up Miniconda ${{ matrix.python-version }} | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| activate-environment: test-environment | |
| miniconda-version: "latest" | |
| python-version: ${{ matrix.python-version }} | |
| auto-activate-base: false | |
| - name: Test Conda | |
| # this test is disabled on ubuntu until default channel supports numpy 2 | |
| if: False | |
| shell: bash -l {0} | |
| run: | | |
| # use conda versions instead of pypi versions. install before anything else. | |
| conda create -q -n test-env-conda -c conda-forge python=${{ matrix.python-version }} numpy scipy h5py imageio setuptools pip -y | |
| conda activate test-env-conda | |
| # this does not work on ubuntu with Qt 6.8. | |
| # until numpy 2 is available, use pip | |
| # pip install numpy scipy h5py imageio setuptools | |
| # until numpy 2 compatible versions are on nion channel, use direct source | |
| pip install git+https://github.com/nion-software/nionutils.git#egg=nionutils | |
| pip install git+https://github.com/nion-software/nionui.git#egg=nionui | |
| pip install git+https://github.com/nion-software/niondata.git#egg=niondata | |
| pip install git+https://github.com/nion-software/nionswift-io.git#egg=nionswift-io | |
| pip install git+https://github.com/nion-software/nionswift.git#egg=nionswift | |
| # conda install -q -y -c nion ${{ env.tool-package }} | |
| conda install -q -y ${{steps.download_conda.outputs.download-path}}/*.tar.bz2 | |
| pushd nionui_app_test | |
| python -m pip install . | |
| popd | |
| echo "Running test..." | |
| conda list | |
| xvfb-run -a ${{ env.tool-exe }} nionui_app.test_ack | |
| sleep 5 | |
| xvfb-run -a ${{ env.tool-exe }} nionui_app.test_ack | grep ACK | |
| sleep 5 | |
| conda deactivate | |
| - name: Test Conda Forge | |
| shell: bash -l {0} | |
| run: | | |
| # use conda versions instead of pypi versions. install before anything else. | |
| conda create -q -n test-env -c conda-forge python=${{ matrix.python-version }} numpy scipy h5py imageio setuptools -y | |
| conda activate test-env | |
| # until numpy 2 compatible versions are on nion channel, use direct source | |
| pip install git+https://github.com/nion-software/nionutils.git#egg=nionutils | |
| pip install git+https://github.com/nion-software/nionui.git#egg=nionui | |
| pip install git+https://github.com/nion-software/niondata.git#egg=niondata | |
| pip install git+https://github.com/nion-software/nionswift-io.git#egg=nionswift-io | |
| pip install git+https://github.com/nion-software/nionswift.git#egg=nionswift | |
| # conda install -q -y -c nion -c conda-forge ${{ env.tool-package }} | |
| conda install -q -y -c conda-forge ${{steps.download_conda.outputs.download-path}}/*.tar.bz2 | |
| pushd nionui_app_test | |
| python -m pip install . | |
| popd | |
| echo "Running test..." | |
| conda list | |
| xvfb-run -a ${{ env.tool-exe }} nionui_app.test_ack | |
| sleep 5 | |
| xvfb-run -a ${{ env.tool-exe }} nionui_app.test_ack | grep ACK | |
| sleep 5 | |
| conda deactivate | |
| - name: Build/publish anaconda package | |
| if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags') && matrix.os == 'ubuntu-20.04' | |
| shell: bash -l {0} | |
| run: | | |
| # make a directory to avoid name conflicts with the channel. argh. | |
| mkdir conda_build | |
| pushd conda_build | |
| echo "conda create anaconda-client env" | |
| conda create -n upload-env -q conda-build anaconda-client -y | |
| echo "activate" | |
| conda activate upload-env | |
| echo "conda info" | |
| conda info | |
| echo "conda list" | |
| conda list | |
| echo "directory list" | |
| ls -Rl ${{steps.download_conda.outputs.download-path}} | |
| echo "anaconda upload" | |
| anaconda --token ${{ secrets.anaconda_token }} upload --user nion --skip-existing ${{steps.download_conda.outputs.download-path}}/*.tar.bz2 | |
| echo "deactivate" | |
| conda deactivate | |
| echo "popd" | |
| popd | |
| test_macos: | |
| needs: build_macos | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [macos-13] | |
| python-version: ["3.11", "3.12", "3.13"] | |
| architecture: [x86_64] | |
| qt-version: ["6.8.1"] | |
| include: | |
| - os: macos-14 | |
| python-version: "3.12" | |
| architecture: arm64 | |
| qt-version: "6.8.1" | |
| - os: macos-14 | |
| python-version: "3.13" | |
| architecture: arm64 | |
| qt-version: "6.8.1" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Download Wheel | |
| uses: actions/download-artifact@v4 | |
| id: download_wheel | |
| with: | |
| name: ${{ env.tool-id }}-macos-whl-${{ matrix.architecture }}-${{ matrix.python-version }} | |
| path: downloads | |
| - name: Download Conda | |
| uses: actions/download-artifact@v4 | |
| id: download_conda | |
| with: | |
| name: ${{ env.tool-id }}-macos-conda-${{ matrix.architecture }}-${{ matrix.python-version }} | |
| path: conda_downloads | |
| - name: Set up Python ${{ matrix.python-version }} with official build | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Test system Python installed with brew with virtual environment | |
| shell: bash | |
| run: | | |
| brew update | |
| brew install python@${{ matrix.python-version }} || true | |
| SYSTEM_PYTHON_EXE=/usr/local/bin/python${{ matrix.python-version }} | |
| $SYSTEM_PYTHON_EXE -m venv test_venv | |
| source test_venv/bin/activate | |
| python -m pip install --upgrade pip | |
| python -m pip install setuptools | |
| # until numpy 2 compatible versions are on nion channel, use direct source | |
| pip install git+https://github.com/nion-software/nionutils.git#egg=nionutils | |
| pip install git+https://github.com/nion-software/nionui.git#egg=nionui | |
| pip install git+https://github.com/nion-software/niondata.git#egg=niondata | |
| pip install git+https://github.com/nion-software/nionswift-io.git#egg=nionswift-io | |
| pip install git+https://github.com/nion-software/nionswift.git#egg=nionswift | |
| # python -m pip install ${{ env.tool-package }} | |
| python -m pip install ${{steps.download_wheel.outputs.download-path}}/*.whl | |
| python --version | |
| python -m pip install numpy scipy h5py | |
| pushd nionui_app_test | |
| python -m pip install . | |
| popd | |
| echo "Running test..." | |
| ${{ env.tool-exe }} nionui_app.test_ack | |
| ${{ env.tool-exe }} nionui_app.test_ack | grep ACK | |
| - name: Test system Python installed with official build with virtual environment | |
| shell: bash | |
| run: | | |
| SYSTEM_PYTHON_EXE=python3 | |
| $SYSTEM_PYTHON_EXE -m venv test_venv | |
| source test_venv/bin/activate | |
| python -m pip install --upgrade pip | |
| python -m pip install setuptools | |
| # until numpy 2 compatible versions are on nion channel, use direct source | |
| pip install git+https://github.com/nion-software/nionutils.git#egg=nionutils | |
| pip install git+https://github.com/nion-software/nionui.git#egg=nionui | |
| pip install git+https://github.com/nion-software/niondata.git#egg=niondata | |
| pip install git+https://github.com/nion-software/nionswift-io.git#egg=nionswift-io | |
| pip install git+https://github.com/nion-software/nionswift.git#egg=nionswift | |
| # python -m pip install ${{ env.tool-package }} | |
| python -m pip install ${{steps.download_wheel.outputs.download-path}}/*.whl | |
| python --version | |
| python -m pip install numpy scipy h5py | |
| pushd nionui_app_test | |
| python -m pip install . | |
| popd | |
| echo "Running test..." | |
| ${{ env.tool-exe }} nionui_app.test_ack | |
| ${{ env.tool-exe }} nionui_app.test_ack | grep ACK | |
| deactivate | |
| - name: Set up Miniconda ${{ matrix.python-version }} | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| activate-environment: test-environment | |
| miniconda-version: "latest" | |
| python-version: ${{ matrix.python-version }} | |
| architecture: ${{ matrix.architecture }} | |
| auto-activate-base: false | |
| - name: Test Conda | |
| shell: bash -l {0} | |
| run: | | |
| # use conda versions instead of pypi versions. install before anything else. | |
| # until numpy 2 is available, use pip | |
| pip install numpy scipy h5py imageio setuptools | |
| ## use nomkl until anaconda gets its act together | |
| # conda install -q nomkl numpy scipy h5py imageio setuptools -y | |
| # until numpy 2 compatible versions are on nion channel, use direct source | |
| pip install git+https://github.com/nion-software/nionutils.git#egg=nionutils | |
| pip install git+https://github.com/nion-software/nionui.git#egg=nionui | |
| pip install git+https://github.com/nion-software/niondata.git#egg=niondata | |
| pip install git+https://github.com/nion-software/nionswift-io.git#egg=nionswift-io | |
| pip install git+https://github.com/nion-software/nionswift.git#egg=nionswift | |
| # conda install -q -y -c nion ${{ env.tool-package }} | |
| FILENAME=$(find '${{steps.download_conda.outputs.download-path}}' -name "*.tar.bz2") | |
| echo "Installing '$FILENAME'" | |
| conda install -q -y -c conda-forge $FILENAME | |
| pushd nionui_app_test | |
| python -m pip install . | |
| popd | |
| echo "Running test..." | |
| conda list | |
| ${{ env.tool-exe }} nionui_app.test_ack | |
| ${{ env.tool-exe }} nionui_app.test_ack | grep ACK | |
| - name: Test Conda Forge | |
| shell: bash -l {0} | |
| run: | | |
| # use conda versions instead of pypi versions. install before anything else. | |
| # use nomkl until anaconda gets its act together | |
| conda create -n test-env -c conda-forge -q python=${{ matrix.python-version }} numpy scipy h5py imageio setuptools -y | |
| conda activate test-env | |
| # until numpy 2 compatible versions are on nion channel, use direct source | |
| pip install git+https://github.com/nion-software/nionutils.git#egg=nionutils | |
| pip install git+https://github.com/nion-software/nionui.git#egg=nionui | |
| pip install git+https://github.com/nion-software/niondata.git#egg=niondata | |
| pip install git+https://github.com/nion-software/nionswift-io.git#egg=nionswift-io | |
| pip install git+https://github.com/nion-software/nionswift.git#egg=nionswift | |
| # conda install -q -y -c nion -c conda-forge ${{ env.tool-package }} | |
| FILENAME=$(find '${{steps.download_conda.outputs.download-path}}' -name "*.tar.bz2") | |
| echo "Installing '$FILENAME'" | |
| conda install -q -y -c conda-forge $FILENAME | |
| pushd nionui_app_test | |
| python -m pip install . | |
| popd | |
| echo "Running test..." | |
| conda list | |
| ${{ env.tool-exe }} nionui_app.test_ack | |
| ${{ env.tool-exe }} nionui_app.test_ack | grep ACK | |
| conda deactivate | |
| - name: Build/publish anaconda package | |
| if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags') | |
| shell: bash -l {0} | |
| run: | | |
| # make a directory to avoid name conflicts with the channel. argh. | |
| mkdir conda_build | |
| pushd conda_build | |
| conda create -n upload-env -q conda-build anaconda-client -y | |
| conda activate upload-env | |
| FILENAME=$(find '${{steps.download_conda.outputs.download-path}}' -name "*.tar.bz2") | |
| echo "Send to Anaconda '$FILENAME'" | |
| anaconda --token ${{ secrets.anaconda_token }} upload --user nion --skip-existing $FILENAME | |
| conda deactivate | |
| popd | |
| test_win: | |
| needs: build_win | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [windows-2019] | |
| python-version: ["3.11", "3.12", "3.13"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Download Wheel | |
| uses: actions/download-artifact@v4 | |
| id: download_wheel | |
| with: | |
| name: ${{ env.tool-id }}-win-whl-${{ matrix.python-version }} | |
| path: downloads | |
| - name: Download Conda | |
| uses: actions/download-artifact@v4 | |
| id: download_conda | |
| with: | |
| name: ${{ env.tool-id }}-win-conda-${{ matrix.python-version }} | |
| path: conda_downloads | |
| - name: Set up Python ${{ matrix.python-version }} with official build | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Test system Python installed with official build with virtual environment | |
| shell: pwsh | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m venv test_venv | |
| test_venv\Scripts\activate | |
| python -m pip install --upgrade pip | |
| python -m pip install setuptools | |
| # until numpy 2 compatible versions are on nion channel, use direct source | |
| pip install git+https://github.com/nion-software/nionutils.git#egg=nionutils | |
| pip install git+https://github.com/nion-software/nionui.git#egg=nionui | |
| pip install git+https://github.com/nion-software/niondata.git#egg=niondata | |
| pip install git+https://github.com/nion-software/nionswift-io.git#egg=nionswift-io | |
| pip install git+https://github.com/nion-software/nionswift.git#egg=nionswift | |
| # python -m pip install ${{ env.tool-package }} | |
| $filename = Get-ChildItem -name ${{steps.download_wheel.outputs.download-path}}\*.whl | |
| python -m pip install ${{steps.download_wheel.outputs.download-path}}\$filename | |
| python --version | |
| python -m pip install numpy scipy h5py | |
| pushd nionui_app_test | |
| python -m pip install . | |
| popd | |
| echo "Running test..." | |
| ${{ env.tool-exe }} nionui_app.test_ack | |
| ${{ env.tool-exe }} nionui_app.test_ack | grep ACK | |
| deactivate | |
| - name: Set up Miniconda ${{ matrix.python-version }} | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| activate-environment: test-environment | |
| miniconda-version: "latest" | |
| python-version: ${{ matrix.python-version }} | |
| auto-activate-base: false | |
| - name: Test Conda | |
| shell: pwsh | |
| run: | | |
| # use conda versions instead of pypi versions. install before anything else. | |
| conda update -q --all -y | |
| # until numpy 2 is available, use pip | |
| pip install numpy scipy h5py imageio setuptools | |
| # conda install -q numpy scipy h5py imageio setuptools pip -y | |
| # until numpy 2 compatible versions are on nion channel, use direct source | |
| pip install git+https://github.com/nion-software/nionutils.git#egg=nionutils | |
| pip install git+https://github.com/nion-software/nionui.git#egg=nionui | |
| pip install git+https://github.com/nion-software/niondata.git#egg=niondata | |
| pip install git+https://github.com/nion-software/nionswift-io.git#egg=nionswift-io | |
| pip install git+https://github.com/nion-software/nionswift.git#egg=nionswift | |
| # conda install -q -y -c nion ${{ env.tool-package }} | |
| $filename = Get-ChildItem -name ${{steps.download_conda.outputs.download-path}}\*.tar.bz2 | |
| conda install -q -y ${{steps.download_conda.outputs.download-path}}\$filename | |
| pushd nionui_app_test | |
| python -m pip install . | |
| popd | |
| echo "Running test..." | |
| conda list | |
| ${{ env.tool-exe }} nionui_app.test_ack | |
| ${{ env.tool-exe }} nionui_app.test_ack | grep ACK | |
| - name: Test Conda Forge | |
| shell: pwsh | |
| run: | | |
| # use conda versions instead of pypi versions. install before anything else. | |
| conda create -n test-env -c conda-forge -q python=${{ matrix.python-version }} numpy scipy h5py imageio setuptools -y | |
| conda activate test-env | |
| # until numpy 2 compatible versions are on nion channel, use direct source | |
| pip install git+https://github.com/nion-software/nionutils.git#egg=nionutils | |
| pip install git+https://github.com/nion-software/nionui.git#egg=nionui | |
| pip install git+https://github.com/nion-software/niondata.git#egg=niondata | |
| pip install git+https://github.com/nion-software/nionswift-io.git#egg=nionswift-io | |
| pip install git+https://github.com/nion-software/nionswift.git#egg=nionswift | |
| # conda install -q -y -c nion -c conda-forge ${{ env.tool-package }} | |
| $filename = Get-ChildItem -name ${{steps.download_conda.outputs.download-path}}\*.tar.bz2 | |
| conda install -q -y -c conda-forge ${{steps.download_conda.outputs.download-path}}\$filename | |
| pushd nionui_app_test | |
| python -m pip install . | |
| popd | |
| echo "Running test..." | |
| conda list | |
| ${{ env.tool-exe }} nionui_app.test_ack | |
| ${{ env.tool-exe }} nionui_app.test_ack | grep ACK | |
| conda deactivate | |
| - name: Build/publish anaconda package | |
| if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags') && matrix.os == 'windows-2019' | |
| shell: bash -l {0} | |
| run: | | |
| # make a directory to avoid name conflicts with the channel. argh. | |
| mkdir conda_build | |
| pushd conda_build | |
| conda create -n upload-env -q conda-build anaconda-client -y | |
| conda activate upload-env | |
| FILENAME=$(find '${{steps.download_conda.outputs.download-path}}' -name "*.tar.bz2") | |
| echo "Send to Anaconda '$FILENAME'" | |
| anaconda --token ${{ secrets.anaconda_token }} upload --user nion --skip-existing $FILENAME | |
| conda deactivate | |
| popd | |
| pypi-publish: | |
| name: Upload release to PyPI | |
| needs: [test_linux, test_macos, test_win] | |
| runs-on: ubuntu-latest | |
| if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags') | |
| environment: | |
| name: release | |
| url: https://pypi.org/p/nionswift-tool | |
| permissions: | |
| id-token: write # IMPORTANT: this permission is mandatory for trusted publishing | |
| steps: | |
| - name: Download All Artifacts | |
| uses: actions/download-artifact@v4 | |
| - name: Remove all the files except the ones to upload to PyPI. | |
| shell: bash | |
| run: | | |
| mkdir dist | |
| find . -name "*cp311*.whl" -exec cp {} dist \; | |
| ls -Rl . | |
| - name: Publish package distributions to PyPI | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| skip-existing: true | |
| print-hash: true |