finalization v0.3

added .ipynb for sequence encoding and model testing
niklases · Jun 26, 2023 · 5cc18cc · 5cc18cc
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diff --git a/README.md b/README.md
@@ -36,7 +36,7 @@ Preprint available at bioRxiv: https://doi.org/10.1101/2022.06.07.495081.
 <a name="pypef"></a>
 # PyPEF: Pythonic Protein Engineering Framework
 [![PyPI version](https://img.shields.io/pypi/v/PyPEF?color=blue)](https://pypi.org/project/pypef/)
-[![Python version](https://img.shields.io/pypi/pyversions/PyPEF)](https://pypi.org/project/pypef/)
+[![Python version](https://img.shields.io/pypi/pyversions/PyPEF)](https://www.python.org/downloads/)
 
 a framework written in Python 3 for performing sequence-based machine learning-assisted protein engineering to predict a protein's fitness from its sequence using different forms of sequence encoding:
 - One-hot encoding

diff --git a/workflow/api_encoding_train_test.ipynb b/workflow/api_encoding_train_test.ipynb
diff --git a/workflow/run_cli_tests_win.ps1 b/workflow/run_cli_tests_win.ps1
@@ -24,7 +24,7 @@ $env:PYTHONPATH="C:\path\to\pypef-main"
 function pypef { python C:\path\to\pypef-main\pypef\main.py @args }                                                      #
 ##########################################################################################################################
 ### else just use pip-installed pypef version (uncomment):                                                               #
-#function pypef { pypef @args }                                                                                          #
+#pypef = pypef                                                                                                           #
 ##########################################################################################################################
 $threads = 16                                                                                                            #
 ##########################################################################################################################