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added ProteinGym links
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niklases committed Jan 4, 2024
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Expand Up @@ -422,7 +422,7 @@ To make zero-shot predictions using PyPEF (plmc-DCA or GREMLIN-DCA) just do not
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Other well-performing zero-shot prediction methods with available source code are:
Other well-performing zero-shot prediction methods with available source code are (list not complete, see ProteinGym [repository](https://github.com/OATML-Markslab/ProteinGym) and [website](https://proteingym.org/) for a more detailed overview of available methods and achieved performances):
- ESM-1v/ESM-2 (https://github.com/facebookresearch/esm)
- DeepSequence (https://github.com/debbiemarkslab/DeepSequence)
- EVcouplings (plmc-DCA, https://github.com/debbiemarkslab/EVcouplings)
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