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niekwit committed Nov 15, 2023
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# Snakemake workflow: `<name>`
# Snakemake workflow: `rna-seq-salmon-deseq2`

[![Snakemake](https://img.shields.io/badge/snakemake-≥6.3.0-brightgreen.svg)](https://snakemake.github.io)
[![GitHub actions status](https://github.com/<owner>/<repo>/workflows/Tests/badge.svg?branch=main)](https://github.com/<owner>/<repo>/actions?query=branch%3Amain+workflow%3ATests)
[![GitHub actions status](https://github.com/niekwit/rna-seq-salmon-deseq2/workflows/Tests/badge.svg?branch=main)](https://github.com/niekwit/rna-seq-salmon-deseq2/actions?query=branch%3Amain+workflow%3ATests)


A Snakemake workflow for `<description>`
A Snakemake workflow for `rna-seq-salmon-deseq2`


## Usage

The usage of this workflow is described in the [Snakemake Workflow Catalog](https://snakemake.github.io/snakemake-workflow-catalog/?usage=<owner>%2F<repo>).
The usage of this workflow is described in the [Snakemake Workflow Catalog](https://snakemake.github.io/snakemake-workflow-catalog/?usage=niekwit%2Frna-seq-salmon-deseq2).

If you use this workflow in a paper, don't forget to give credits to the authors by citing the URL of this (original) <repo>sitory and its DOI (see above).

# TODO

* Replace `<owner>` and `<repo>` everywhere in the template (also under .github/workflows) with the correct `<repo>` name and owning user or organization.
* Replace `<name>` with the workflow name (can be the same as `<repo>`).
* Replace `<description>` with a description of what the workflow does.
* The workflow will occur in the snakemake-workflow-catalog once it has been made public. Then the link under "Usage" will point to the usage instructions if `<owner>` and `<repo>` were correctly set.
If you use this workflow in a paper, don't forget to give credits to the authors by citing the URL of this (original) repository and its DOI (see above).

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