tidy up chromosome names

niekwit · Aug 27, 2024 · 4381352 · 4381352
1 parent 0d6d757
commit 4381352
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/.test_pe/resources.sh b/.test_pe/resources.sh
@@ -1,2 +1,3 @@
 # Create fasta file with regions were just peaks are located
-samtools faidx Homo_sapiens.GRCh38.dna.primary_assembly.fa -r regions.txt | pigz > Homo_sapiens.GRCh38.dna.primary_assembly_subset.fa.gz
+samtools faidx Homo_sapiens.GRCh38.dna.primary_assembly.fa -r regions.txt | sed 's/:.*$//' |  pigz > Homo_sapiens.GRCh38.dna.primary_assembly_subset.fa.gz
+