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22 Open 34 Closed
22 Open 34 Closed
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Issues list

Apply for an Amazon Open Data Sponsorship s3 bucket Manuscript
#75 opened Jun 28, 2024 by crosenth
Manuscript outline Documentation Manuscript
#73 opened Jun 24, 2024 by nhoffman
1 of 5 tasks
1
Add --{negative}-taxid support to Blast database(s)
#69 opened Jun 4, 2024 by dhoogest
@crosenth
Web interface https://ya16sdb.labmed.uw.edu/ not operative?
#65 opened Mar 25, 2024 by marykstewart
@crosenth
2
Slurm compatibility
#64 opened Jan 26, 2024 by crosenth
@crosenth
requirements.txt should pin all dependencies
#56 opened Jun 15, 2023 by nhoffman
@crosenth
update pipeline Docker file to use python 3.11 and bookworm base
#55 opened Jun 15, 2023 by nhoffman
@crosenth
Type strain record present in latest NCBI_16S build not visible on https://ya16sdb.labmed.uw.edu/
#54 opened May 8, 2023 by marykstewart
migrate to ECS
#53 opened Feb 7, 2023 by nhoffman
@crosenth
5
Create a Dash Datatable to visualize seq_info.feather file
#52 opened Sep 14, 2022 by crosenth
@crosenth
Investigate updating the Dash app html table into a DataTable enhancement
#48 opened Nov 2, 2021 by crosenth
@crosenth
Records dropped as duplicates but then 'added back' as types are absent from named_type_hits output
#45 opened Oct 12, 2021 by dhoogest
@crosenth
2
Publication status of NCBI records is not current
#38 opened Jun 30, 2020 by marykstewart
@crosenth
include build instructions for singularity images Documentation
#33 opened Mar 14, 2019 by nhoffman
1
Distinguish 16S-only records from those that were extracted from whole genomes enhancement question
#32 opened Feb 15, 2019 by marykstewart
@crosenth
3
generate list of species represented in filter plots
#29 opened Jan 2, 2019 by nhoffman
@crosenth
review dependencies in venv vs singularity images
#27 opened Jan 2, 2019 by nhoffman
1
use singularity image for ncbi tools
#25 opened Jan 2, 2019 by nhoffman
@crosenth
Remove creation of dedicated stack and add deployment to existing dokku instance
#24 opened Jan 2, 2019 by nhoffman
@nhoffman
move axes to top of plot along with other selectors
#22 opened Nov 8, 2018 by nhoffman
@crosenth
1
Add select and deselect all markers (glyphs) option to dash app enhancement
#18 opened Oct 30, 2018 by crosenth
add sphinx docs Documentation
#1 opened Sep 26, 2017 by nhoffman
@crosenth
2
ProTip! Find all open issues with in progress development work with linked:pr.