Skip to content
nf-core CI

Changed Cutadapt to use nf-core modules #1346

Sign in to view logs

Changed Cutadapt to use nf-core modules

Changed Cutadapt to use nf-core modules #1346

Run time

Learn about OS pricing on GitHub Actions
Job Run time
Run pipeline with test data (24.04.2 | test | docker)
4m 21s
Run pipeline with test data (latest-everything | test | docker)
4m 15s
Test parameters (24.04.2 | --consensus_caller ivar | docker)
45s
Test parameters (24.04.2 | --variant_caller bcftools --consensus_caller ivar | docker)
1s
Test nanopore (24.04.2 | --gff false --freyja_depthcutoff 1 | docker)
4m 3s
Test parameters (24.04.2 | --skip_fastp --skip_pangolin | docker)
10s
Test SISPA (24.04.2 | --gff false | docker)
4m 18s
Test nanopore (24.04.2 | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz --freyja_depthcutoff 1 | docker)
4m 20s
Test parameters (24.04.2 | --skip_variants | docker)
1s
Test SISPA (24.04.2 | --genome 'NC_045512.2' | docker)
4m 22s
Test nanopore (24.04.2 | --input false --freyja_depthcutoff 1 | docker)
4m 19s
Test parameters (24.04.2 | --skip_cutadapt --skip_snpeff | docker)
10s
Test SISPA (latest-everything | --gff false | docker)
4m 19s
Test nanopore (24.04.2 | --min_barcode_reads 10000 | docker)
4m 16s
Test parameters (24.04.2 | --skip_kraken2 | docker)
1s
Test SISPA (latest-everything | --genome 'NC_045512.2' | docker)
4m 22s
Test nanopore (24.04.2 | --min_guppyplex_reads 10000 | docker)
3m 52s
Test parameters (24.04.2 | --skip_assembly | docker)
21s
Test nanopore (24.04.2 | --artic_minion_caller medaka --sequencing_summary false --fast5_dir false --freyja_depthcutoff 1 | docker)
4m 19s
Test parameters (24.04.2 | --spades_mode corona | docker)
1s
Test nanopore (24.04.2 | --artic_minion_caller medaka --sequencing_summary false --fast5_dir false --artic_minion_medaka_model ./r941_min_high_g360_model.hdf5 --freyja_depthcutoff 1 | docker)
4m 19s
Test parameters (24.04.2 | --spades_mode metaviral | docker)
1s
Test nanopore (latest-everything | --gff false --freyja_depthcutoff 1 | docker)
1m 15s
Test parameters (24.04.2 | --skip_plasmidid false --skip_asciigenome | docker)
1s
Test nanopore (latest-everything | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz --freyja_depthcutoff 1 | docker)
3m 28s
Test parameters (24.04.2 | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz | docker)
51s
Test nanopore (latest-everything | --input false --freyja_depthcutoff 1 | docker)
1m 46s
Test parameters (24.04.2 | --bowtie2_index ./GCA_009858895.3_ASM985889v3_genomic.200409.bt2.index.tar.gz | docker)
54s
Test nanopore (latest-everything | --min_barcode_reads 10000 | docker)
1m 36s
Test parameters (24.04.2 | --skip_noninternal_primers --threeprime_adapters | docker)
1s
Test nanopore (latest-everything | --min_guppyplex_reads 10000 | docker)
1m 36s
Test parameters (latest-everything | --consensus_caller ivar | docker)
1s
Test nanopore (latest-everything | --artic_minion_caller medaka --sequencing_summary false --fast5_dir false --freyja_depthcutoff 1 | docker)
1m 32s
Test parameters (latest-everything | --variant_caller bcftools --consensus_caller ivar | docker)
1s
Test nanopore (latest-everything | --artic_minion_caller medaka --sequencing_summary false --fast5_dir false --artic_minion_medaka_model ./r941_min_high_g360_model.hdf5 --freyja_depthcutoff 1 | docker)
1m 13s
Test parameters (latest-everything | --skip_fastp --skip_pangolin | docker)
1s
Test parameters (latest-everything | --skip_variants | docker)
1s
Test parameters (latest-everything | --skip_cutadapt --skip_snpeff | docker)
1s
Test parameters (latest-everything | --skip_kraken2 | docker)
1s
Test parameters (latest-everything | --skip_assembly | docker)
1s
Test parameters (latest-everything | --spades_mode corona | docker)
1s
Test parameters (latest-everything | --spades_mode metaviral | docker)
1s
Test parameters (latest-everything | --skip_plasmidid false --skip_asciigenome | docker)
1s
Test parameters (latest-everything | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz | docker)
1s
Test parameters (latest-everything | --bowtie2_index ./GCA_009858895.3_ASM985889v3_genomic.200409.bt2.index.tar.gz | docker)
1s
Test parameters (latest-everything | --skip_noninternal_primers --threeprime_adapters | docker)
1s
1h 11m 22s