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Merge pull request #444 from nf-core/nf-core-template-merge-3.0.2 #1345

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Merge pull request #444 from nf-core/nf-core-template-merge-3.0.2

Merge pull request #444 from nf-core/nf-core-template-merge-3.0.2 #1345

Triggered via push October 17, 2024 13:00
@maxulyssemaxulysse
pushed e1eb311
dev
Status Failure
Total duration 1h 28m 2s
Artifacts –

ci.yml

on: push
Matrix: test
Matrix: test_nanopore
Matrix: test_parameters
Matrix: test_sispa
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47 errors
Test parameters (24.04.2 | --skip_assembly | docker)
Process completed with exit code 1.
Test parameters (24.04.2 | --variant_caller bcftools --consensus_caller ivar | docker)
The job was canceled because "_24_04_2_docker_--skip_as" failed.
Test parameters (latest-everything | --consensus_caller ivar | docker)
The job was canceled because "_24_04_2_docker_--skip_as" failed.
Test parameters (latest-everything | --consensus_caller ivar | docker)
The operation was canceled.
Test parameters (latest-everything | --skip_cutadapt --skip_snpeff | docker)
The job was canceled because "_24_04_2_docker_--skip_as" failed.
Test parameters (latest-everything | --skip_cutadapt --skip_snpeff | docker)
The operation was canceled.
Test parameters (latest-everything | --spades_mode corona | docker)
The job was canceled because "_24_04_2_docker_--skip_as" failed.
Test parameters (latest-everything | --spades_mode corona | docker)
The operation was canceled.
Test parameters (24.04.2 | --skip_cutadapt --skip_snpeff | docker)
The job was canceled because "_24_04_2_docker_--skip_as" failed.
Test parameters (24.04.2 | --skip_cutadapt --skip_snpeff | docker)
The operation was canceled.
Test parameters (latest-everything | --skip_assembly | docker)
The job was canceled because "_24_04_2_docker_--skip_as" failed.
Test parameters (latest-everything | --skip_assembly | docker)
The operation was canceled.
Test parameters (24.04.2 | --consensus_caller ivar | docker)
The job was canceled because "_24_04_2_docker_--skip_as" failed.
Test parameters (24.04.2 | --consensus_caller ivar | docker)
The operation was canceled.
Test parameters (24.04.2 | --spades_mode metaviral | docker)
The job was canceled because "_24_04_2_docker_--skip_as" failed.
Test parameters (24.04.2 | --spades_mode metaviral | docker)
The operation was canceled.
Test parameters (latest-everything | --spades_mode metaviral | docker)
The job was canceled because "_24_04_2_docker_--skip_as" failed.
Test parameters (latest-everything | --spades_mode metaviral | docker)
The operation was canceled.
Test parameters (24.04.2 | --bowtie2_index ./GCA_009858895.3_ASM985889v3_genomic.200409.bt2.index.tar.gz | docker)
The job was canceled because "_24_04_2_docker_--skip_as" failed.
Test parameters (24.04.2 | --bowtie2_index ./GCA_009858895.3_ASM985889v3_genomic.200409.bt2.index.tar.gz | docker)
The operation was canceled.
Test parameters (24.04.2 | --skip_variants | docker)
The job was canceled because "_24_04_2_docker_--skip_as" failed.
Test parameters (24.04.2 | --skip_variants | docker)
The operation was canceled.
Test parameters (24.04.2 | --spades_mode corona | docker)
The job was canceled because "_24_04_2_docker_--skip_as" failed.
Test parameters (24.04.2 | --spades_mode corona | docker)
The operation was canceled.
Test parameters (latest-everything | --skip_variants | docker)
The job was canceled because "_24_04_2_docker_--skip_as" failed.
Test parameters (latest-everything | --skip_variants | docker)
The operation was canceled.
Test parameters (latest-everything | --skip_kraken2 | docker)
The job was canceled because "_24_04_2_docker_--skip_as" failed.
Test parameters (latest-everything | --skip_kraken2 | docker)
The operation was canceled.
Test parameters (24.04.2 | --skip_plasmidid false --skip_asciigenome | docker)
The job was canceled because "_24_04_2_docker_--skip_as" failed.
Test parameters (24.04.2 | --skip_plasmidid false --skip_asciigenome | docker)
The operation was canceled.
Test parameters (24.04.2 | --skip_kraken2 | docker)
The job was canceled because "_24_04_2_docker_--skip_as" failed.
Test parameters (24.04.2 | --skip_kraken2 | docker)
The operation was canceled.
Test parameters (latest-everything | --skip_plasmidid false --skip_asciigenome | docker)
The job was canceled because "_24_04_2_docker_--skip_as" failed.
Test parameters (latest-everything | --skip_plasmidid false --skip_asciigenome | docker)
The operation was canceled.
Test parameters (latest-everything | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz | docker)
The job was canceled because "_24_04_2_docker_--skip_as" failed.
Test parameters (latest-everything | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz | docker)
The operation was canceled.
Test parameters (24.04.2 | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz | docker)
The job was canceled because "_24_04_2_docker_--skip_as" failed.
Test parameters (24.04.2 | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz | docker)
The operation was canceled.
Test parameters (latest-everything | --bowtie2_index ./GCA_009858895.3_ASM985889v3_genomic.200409.bt2.index.tar.gz | docker)
The job was canceled because "_24_04_2_docker_--skip_as" failed.
Test parameters (latest-everything | --bowtie2_index ./GCA_009858895.3_ASM985889v3_genomic.200409.bt2.index.tar.gz | docker)
The operation was canceled.
Test parameters (latest-everything | --skip_fastp --skip_pangolin | docker)
The job was canceled because "_24_04_2_docker_--skip_as" failed.
Test parameters (latest-everything | --skip_fastp --skip_pangolin | docker)
The operation was canceled.
Test parameters (24.04.2 | --skip_fastp --skip_pangolin | docker)
The job was canceled because "_24_04_2_docker_--skip_as" failed.
Test parameters (24.04.2 | --skip_fastp --skip_pangolin | docker)
The operation was canceled.
Test parameters (latest-everything | --variant_caller bcftools --consensus_caller ivar | docker)
The job was canceled because "_24_04_2_docker_--skip_as" failed.
Test parameters (latest-everything | --variant_caller bcftools --consensus_caller ivar | docker)
The operation was canceled.
Test nanopore (24.04.2 | --min_guppyplex_reads 10000 | docker)
Process completed with exit code 1.