Update workflows/rnavar/main.nf

Co-authored-by: Maxime U Garcia <[email protected]>
nf-core · Jan 15, 2025 · 0c18809 · 0c18809
1 parent d477c21
commit 0c18809
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflows/rnavar/main.nf b/workflows/rnavar/main.nf
@@ -285,7 +285,7 @@ workflow RNAVAR {
         def haplotypecaller_out = GATK4_HAPLOTYPECALLER.out.vcf
             .join(GATK4_HAPLOTYPECALLER.out.tbi, failOnMismatch:true, failOnDuplicate:true)
             .map{ meta, vcf, tbi ->
-                def new_meta = meta + [id:meta.sample] - meta.subMap('sample') - meta.subMap("interval_count")
+                def new_meta = meta + [id:meta.sample] - meta.subMap('sample', "interval_count")
                 [ groupKey(new_meta, meta.interval_count), vcf, tbi ]
             }
             .groupTuple()