Skip to content

Commit

Permalink
Update dIF definition
Browse files Browse the repository at this point in the history
  • Loading branch information
@jesseangelis
jesseangelis committed Jun 6, 2024
1 parent 1f4bd68 commit dad7ffd
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion docs/usage.md
View file
Original file line number Diff line number Diff line change
Expand Up @@ -191,7 +191,7 @@ Prior to DEXSeq DTU analysis, filtering of genes and features with low expressio
### IsoformSwitchAnalyzeR

IsoformSwitchAnalyzeR as described by [Vitting-Seerup et al., 2019](https://doi.org/10.1093/bioinformatics/btz247) performs a genome-wide analysis of splicing patterns and identifies isoform switches. It takes a salmon results directory as input so either `--source fastq` or `--source salmon_results` must be given. Two parameters can be set:
`--isoformswitchanalyzer_alpha` sets the significance threshold and `--isoformswitchanalyzer_dIF` sets the minimum absolute difference in isoform expression.
`--isoformswitchanalyzer_alpha` sets the significance threshold and `--isoformswitchanalyzer_dIF` sets the minimum absolute difference in isoform usage.

## Event based approaches

Expand Down

0 comments on commit dad7ffd

Please sign in to comment.