Merge branch 'master' into dev

nf-core · Nov 15, 2023 · d77b483 · d77b483
2 parents 6ec7798 + 29d9f34
commit d77b483
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Showing 3 changed files with 5 additions and 7 deletions.
diff --git a/README.md b/README.md
@@ -115,8 +115,7 @@ For further information or help, don't hesitate to get in touch on the [Slack `#
 
 ## Citations
 
-<!-- TODO nf-core: Add citation for pipeline after first release. Uncomment lines below and update Zenodo doi and badge at the top of this file. -->
-<!-- If you use  nf-core/rnasplice for your analysis, please cite it using the following doi: [10.5281/zenodo.XXXXXX](https://doi.org/10.5281/zenodo.XXXXXX) -->
+If you use nf-core/rnasplice for your analysis, please cite it using the following doi: [10.5281/zenodo.8424632](https://doi.org/10.5281/zenodo.8424632)
 
 An extensive list of references for the tools used by the pipeline can be found in the [`CITATIONS.md`](CITATIONS.md) file.
 

diff --git a/lib/WorkflowMain.groovy b/lib/WorkflowMain.groovy
@@ -11,9 +11,8 @@ class WorkflowMain {
     //
     public static String citation(workflow) {
         return "If you use ${workflow.manifest.name} for your analysis please cite:\n\n" +
-            // TODO nf-core: Add Zenodo DOI for pipeline after first release
-            //"* The pipeline\n" +
-            //"  https://doi.org/10.5281/zenodo.XXXXXXX\n\n" +
+            "* The pipeline\n" +
+            "  https://doi.org/10.5281/zenodo.8424632\n\n" +
             "* The nf-core framework\n" +
             "  https://doi.org/10.1038/s41587-020-0439-x\n\n" +
             "* Software dependencies\n" +

diff --git a/nextflow.config b/nextflow.config
@@ -352,8 +352,8 @@ manifest {
     description     = """Alternative splicing analysis using RNA-seq."""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=23.04.0'
-    version = '1.0.1'
-    doi             = ''
+    version         = '1.0.1'
+    doi             = '10.5281/zenodo.8424632'
 }
 
 // Load modules.config for DSL2 module specific options