Merge pull request #82 from zifornd/81-edger_exon-fails-if-only-singl…

…e-entry-in-contrast-sheet keep contrasts as array when only one level
nf-core · Jul 21, 2023 · 35da580 · 35da580
2 parents 85631a2 + 62d9f4d
commit 35da580
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/bin/run_edger_exon.R b/bin/run_edger_exon.R
@@ -107,7 +107,7 @@ contrasts <- makeContrasts(contrasts = contrasts, levels = groups)
 
 colnames(contrasts) <- names
 
-contrasts <- contrasts[, colSums(contrasts != 0) > 0]
+contrasts <- contrasts[, colSums(contrasts != 0) > 0, drop = FALSE]
 
 
 # Estimate dispersions by empirical Bayes