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prepare RC 3.16.0 #1394

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merged 7 commits into from
Oct 2, 2024
Merged

prepare RC 3.16.0 #1394

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30483c7
prepare RC 3.15.2
maxulysse Sep 30, 2024
1424156
update version in snapshots too
maxulysse Sep 30, 2024
b80c6c5
update CHANGELOG
maxulysse Oct 1, 2024
1d50d31
3.16.0 instead of 3.15.2
maxulysse Oct 1, 2024
d19cea4
Update CHANGELOG.md
maxulysse Oct 1, 2024
a5d636a
Merge branch 'dev' into prepare_3.15.2
maxulysse Oct 2, 2024
73c8101
forgot a merge
maxulysse Oct 2, 2024
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15 changes: 14 additions & 1 deletion CHANGELOG.md
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The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## v3.16.0dev - [date]
## [[3.16.0](https://github.com/nf-core/rnaseq/releases/tag/3.16.0)] - 2024-10-02

### Credits

Special thanks to the following for their contributions to the release:

- [Adam Talbot](https://github.com/adamrtalbot)
- [Ezra Greenberg](https://github.com/egreenberg7)
- [Jonathan Manning](https://github.com/pinin4fjords)
- [Matthias Zepper](https://github.com/MatthiasZepper)
- [Maxime Garcia](https://github.com/maxulysse)
- [Paolo Di Tommaso](https://github.com/pditommaso)
- [Phil Ewels](https://github.com/ewels)
- [Shaun Regenbaum](https://github.com/Shaun-Regenbaum)

### Enhancements & fixes

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2 changes: 1 addition & 1 deletion nextflow.config
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Expand Up @@ -345,7 +345,7 @@ manifest {
description = """RNA sequencing analysis pipeline for gene/isoform quantification and extensive quality control."""
mainScript = 'main.nf'
nextflowVersion = '!>=23.04.0'
version = '3.16.0dev'
version = '3.16.0'
doi = 'https://doi.org/10.5281/zenodo.1400710'
}

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6 changes: 3 additions & 3 deletions tests/default.nf.test.snap
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"untar": 1.34
},
"Workflow": {
"nf-core/rnaseq": "v3.16.0dev"
"nf-core/rnaseq": "v3.16.0"
}
},
[
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"untar": 1.34
},
"Workflow": {
"nf-core/rnaseq": "v3.16.0dev"
"nf-core/rnaseq": "v3.16.0"
}
},
[
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},
"timestamp": "2024-10-02T08:39:09.000328"
}
}
}
6 changes: 3 additions & 3 deletions tests/featurecounts_group_type.nf.test.snap
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"untar": 1.34
},
"Workflow": {
"nf-core/rnaseq": "v3.16.0dev"
"nf-core/rnaseq": "v3.16.0"
}
},
[
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"untar": 1.34
},
"Workflow": {
"nf-core/rnaseq": "v3.16.0dev"
"nf-core/rnaseq": "v3.16.0"
}
},
[
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},
"timestamp": "2024-10-02T07:37:24.538529"
}
}
}
6 changes: 3 additions & 3 deletions tests/hisat2.nf.test.snap
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"untar": 1.34
},
"Workflow": {
"nf-core/rnaseq": "v3.16.0dev"
"nf-core/rnaseq": "v3.16.0"
}
},
[
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"untar": 1.34
},
"Workflow": {
"nf-core/rnaseq": "v3.16.0dev"
"nf-core/rnaseq": "v3.16.0"
}
},
[
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},
"timestamp": "2024-10-02T07:43:07.13584"
}
}
}
6 changes: 3 additions & 3 deletions tests/kallisto.nf.test.snap
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"untar": 1.34
},
"Workflow": {
"nf-core/rnaseq": "v3.16.0dev"
"nf-core/rnaseq": "v3.16.0"
}
},
[
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"untar": 1.34
},
"Workflow": {
"nf-core/rnaseq": "v3.16.0dev"
"nf-core/rnaseq": "v3.16.0"
}
},
[
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},
"timestamp": "2024-10-02T07:47:31.044439"
}
}
}
6 changes: 3 additions & 3 deletions tests/min_mapped_reads.nf.test.snap
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"untar": 1.34
},
"Workflow": {
"nf-core/rnaseq": "v3.16.0dev"
"nf-core/rnaseq": "v3.16.0"
}
},
[
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"untar": 1.34
},
"Workflow": {
"nf-core/rnaseq": "v3.16.0dev"
"nf-core/rnaseq": "v3.16.0"
}
},
[
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},
"timestamp": "2024-10-02T07:55:19.233936"
}
}
}
6 changes: 3 additions & 3 deletions tests/remove_ribo_rna.nf.test.snap
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"untar": 1.34
},
"Workflow": {
"nf-core/rnaseq": "v3.16.0dev"
"nf-core/rnaseq": "v3.16.0"
}
},
[
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"untar": 1.34
},
"Workflow": {
"nf-core/rnaseq": "v3.16.0dev"
"nf-core/rnaseq": "v3.16.0"
}
},
[
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},
"timestamp": "2024-10-02T08:08:00.752563"
}
}
}
6 changes: 3 additions & 3 deletions tests/salmon.nf.test.snap
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"untar": 1.34
},
"Workflow": {
"nf-core/rnaseq": "v3.16.0dev"
"nf-core/rnaseq": "v3.16.0"
}
},
[
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"untar": 1.34
},
"Workflow": {
"nf-core/rnaseq": "v3.16.0dev"
"nf-core/rnaseq": "v3.16.0"
}
},
[
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},
"timestamp": "2024-10-02T08:11:32.236118"
}
}
}
6 changes: 3 additions & 3 deletions tests/skip_qc.nf.test.snap
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"untar": 1.34
},
"Workflow": {
"nf-core/rnaseq": "v3.16.0dev"
"nf-core/rnaseq": "v3.16.0"
}
},
[
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"untar": 1.34
},
"Workflow": {
"nf-core/rnaseq": "v3.16.0dev"
"nf-core/rnaseq": "v3.16.0"
}
},
[
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},
"timestamp": "2024-10-02T08:17:03.577873"
}
}
}
4 changes: 2 additions & 2 deletions tests/skip_trimming.nf.test.snap
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"untar": 1.34
},
"Workflow": {
"nf-core/rnaseq": "v3.16.0dev"
"nf-core/rnaseq": "v3.16.0"
}
},
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},
"timestamp": "2024-10-02T08:24:30.328195"
}
}
}
6 changes: 3 additions & 3 deletions tests/star_rsem.nf.test.snap
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"untar": 1.34
},
"Workflow": {
"nf-core/rnaseq": "v3.16.0dev"
"nf-core/rnaseq": "v3.16.0"
}
},
[
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"untar": 1.34
},
"Workflow": {
"nf-core/rnaseq": "v3.16.0dev"
"nf-core/rnaseq": "v3.16.0"
}
},
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},
"timestamp": "2024-10-02T08:31:54.433237"
}
}
}
2 changes: 1 addition & 1 deletion workflows/rnaseq/assets/multiqc/multiqc_config.yml
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report_comment: >
This report has been generated by the <a href="https://github.com/nf-core/rnaseq/releases/tag/3.16.0dev" target="_blank">nf-core/rnaseq</a> analysis pipeline. For information about how to interpret these results, please see the <a href="https://nf-co.re/rnaseq/3.16.0dev/docs/output" target="_blank">documentation</a>.
This report has been generated by the <a href="https://github.com/nf-core/rnaseq/releases/tag/3.16.0" target="_blank">nf-core/rnaseq</a> analysis pipeline. For information about how to interpret these results, please see the <a href="https://nf-co.re/rnaseq/3.16.0/docs/output" target="_blank">documentation</a>.
report_section_order:
# Important checks and failures
sample-status:
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