Properly disable conda pipeline level tests

fix #1415
nf-core · Oct 16, 2024 · 7bb5400 · 7bb5400
1 parent 4061de3
commit 7bb5400
Showing 1 changed file with 10 additions and 12 deletions.
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -66,27 +66,25 @@ jobs:
           - isMaster: false
             profile: "singularity"
           - profile: "conda"
-            nf_test_files: default.nf.test
+            nf_test_files: "tests/default.nf.test"
           - profile: "conda"
-            nf_test_files: featurecounts_group_type.nf.test
+            nf_test_files: "tests/featurecounts_group_type.nf.test"
           - profile: "conda"
-            nf_test_files: hisat2.nf.test
+            nf_test_files: "tests/hisat2.nf.test"
           - profile: "conda"
-            nf_test_files: kallisto.nf.test
+            nf_test_files: "tests/kallisto.nf.test"
           - profile: "conda"
-            nf_test_files: min_mapped_reads.nf.test
+            nf_test_files: "tests/min_mapped_reads.nf.test"
           - profile: "conda"
-            nf_test_files: nextflow.config
+            nf_test_files: "tests/remove_ribo_rna.nf.test"
           - profile: "conda"
-            nf_test_files: remove_ribo_rna.nf.test
+            nf_test_files: "tests/salmon.nf.test"
           - profile: "conda"
-            nf_test_files: salmon.nf.test
+            nf_test_files: "tests/skip_qc.nf.test"
           - profile: "conda"
-            nf_test_files: skip_qc.nf.test
+            nf_test_files: "tests/skip_trimming.nf.test"
           - profile: "conda"
-            nf_test_files: skip_trimming.nf.test
-          - profile: "conda"
-            nf_test_files: star_rsem.nf.test
+            nf_test_files: "tests/star_rsem.nf.test"
     steps:
       - name: Check out pipeline code
         uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b # v4