Merge pull request #1350 from nf-core/bump_bedtools_mem

Reduce resource usage for sort process in bedtools/genomecov
nf-core · Aug 7, 2024 · 6a508f0 · 6a508f0
2 parents 809f060 + add81e8
commit 6a508f0
Show file tree

Hide file tree

Showing 5 changed files with 197 additions and 31 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -106,6 +106,7 @@ Thank you to everyone else that has contributed by reporting bugs, enhancements
 - [PR #1341](https://github.com/nf-core/rnaseq/pull/1341) - Add rename in the MultiQC report for samples without techreps
 - [PR #1342](https://github.com/nf-core/rnaseq/pull/1342) - Factor out preprocessing
 - [PR #1345](https://github.com/nf-core/rnaseq/pull/1345) - Fix preprocessing call
+- [PR #1350](https://github.com/nf-core/rnaseq/pull/1350) - Reduce resource usage for sort process in bedtools/genomecov
 
 ### Parameters
 

diff --git a/modules.json b/modules.json
@@ -12,7 +12,7 @@
                     },
                     "bedtools/genomecov": {
                         "branch": "master",
-                        "git_sha": "81b90194ce9911dbd55bba2c65c6919f6677abc4",
+                        "git_sha": "9ba6b02bbcb322ff4265cc51fca0ee5d8420b929",
                         "installed_by": ["modules"]
                     },
                     "cat/fastq": {

diff --git a/modules/nf-core/bedtools/genomecov/main.nf b/modules/nf-core/bedtools/genomecov/main.nf
diff --git a/modules/nf-core/bedtools/genomecov/tests/main.nf.test b/modules/nf-core/bedtools/genomecov/tests/main.nf.test
diff --git a/modules/nf-core/bedtools/genomecov/tests/main.nf.test.snap b/modules/nf-core/bedtools/genomecov/tests/main.nf.test.snap