Merge pull request #52 from nf-core/bump-markdups-version

Bump MarkDups to 1.1.7
nf-core · May 31, 2024 · 9abc114 · 9abc114
2 parents ce2bf00 + 8d19bff
commit 9abc114
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diff --git a/README.md b/README.md
@@ -122,7 +122,7 @@ in the below table.
 
 ## Known issues
 
-- MarkDups may encounter a fatal error processing hard-clipped supplementary alignments ([#37](https://github.com/nf-core/oncoanalyser/issues/37))
+There are currently no known issues.
 
 ## Credits
 

diff --git a/modules/local/markdups/main.nf b/modules/local/markdups/main.nf
@@ -3,8 +3,8 @@ process MARKDUPS {
     label 'process_medium'
 
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/hmftools-mark-dups:1.1.5--hdfd78af_1' :
-        'biocontainers/hmftools-mark-dups:1.1.5--hdfd78af_1' }"
+        'https://depot.galaxyproject.org/singularity/hmftools-mark-dups:1.1.7--hdfd78af_0' :
+        'biocontainers/hmftools-mark-dups:1.1.7--hdfd78af_0' }"
 
     input:
     tuple val(meta), path(bams), path(bais)