Set bwa-mem2 batch size for reproducibility

Parameter value set to match Sarek default configuration.
nf-core · Jun 4, 2024 · 3dd1e03 · 3dd1e03
1 parent b473fb9
commit 3dd1e03
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/modules/local/bwa-mem2/mem/main.nf b/modules/local/bwa-mem2/mem/main.nf
@@ -33,6 +33,7 @@ process BWAMEM2_ALIGN {
     bwa-mem2 mem \\
         ${args} \\
         -Y \\
+        -K 100000000 \\
         -R '${read_group_tag}' \\
         -t ${task.cpus} \\
         ${genome_fasta} \\