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Run only stubs in CI job
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GHA executing instances do not have sufficient space to run the
COLO829_mini test.
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scwatts committed Mar 15, 2024
1 parent 2838170 commit 23f53ab
Showing 1 changed file with 2 additions and 5 deletions.
7 changes: 2 additions & 5 deletions .github/workflows/ci.yml
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Expand Up @@ -38,9 +38,6 @@ jobs:
- name: Disk space cleanup
uses: jlumbroso/free-disk-space@54081f138730dfa15788a46383842cd2f914a1be # v1.3.1

- name: Run pipeline with test data
# TODO nf-core: You can customise CI pipeline run tests as required
# For example: adding multiple test runs with different parameters
# Remember that you can parallelise this by using strategy.matrix
- name: Run pipeline stubs only
run: |
nextflow run ${GITHUB_WORKSPACE} -profile test,docker --outdir ./results
nextflow run ${GITHUB_WORKSPACE} -stub -profile test_stub --outdir ./results

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