Skip to content

nf-test migration: oncocnv #7657

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom
Open
LouisLeNezet opened this issue Feb 28, 2025 · 2 comments · May be fixed by #8526
Open

nf-test migration: oncocnv #7657

LouisLeNezet opened this issue Feb 28, 2025 · 2 comments · May be fixed by #8526
Assignees
@qclayssen

Comments

@LouisLeNezet
Copy link
Contributor

No description provided.

@SPPearce SPPearce moved this from nf-test migration to Todo in 2025 spring cleaning - modules (Issues) Mar 13, 2025
@qclayssen qclayssen self-assigned this Mar 25, 2025
@qclayssen
Copy link
Contributor

I give it a go to during mars 2024 hackathon, to learn more about nf-test.
only got so far as
Java.lang.RuntimeException: Process has no output channels. process.out can not be used.
on branch.

@qclayssen
Copy link
Contributor

The way the modules cat R code and pipe into R seems wrong

@famosab famosab linked a pull request May 21, 2025 that will close this issue
oncocnv tentative switch to nf-test #8526
Open
17 tasks
famosab added a commit that referenced this issue May 21, 2025
@famosab
Merge branch 'master' into oncocnv-#7657
b819a6b
famosab added a commit that referenced this issue May 21, 2025
@famosab
Merge branch 'master' into oncocnv-#7657
aaf5253
famosab added a commit that referenced this issue May 22, 2025
@famosab
Merge branch 'master' into oncocnv-#7657
72f8832
famosab added a commit that referenced this issue May 22, 2025
@famosab
Merge branch 'oncocnv-#7657' of github.com:nf-core/modules into oncocnv-
c8bd47a 
#7657
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@qclayssen qclayssen

Labels
None yet
Projects
2025 spring cleaning - modules (Issues)
Status: Todo
Hackathon March 2025
Status: To do
Milestone
No milestone
Development

Successfully merging a pull request may close this issue.

oncocnv tentative switch to nf-test nf-core/modules
2 participants
@qclayssen @LouisLeNezet