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CODEOWNERS
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CODEOWNERS
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*.nf.test* @nf-core/nf-test
.github/workflows/test.yml @nf-core/nf-test
tags.yml @nf-core/nf-test
tests/config @nf-core/nf-test
modules/nf-core/abacas/** @joseespinosa @drpatelh
modules/nf-core/abricate/run/** @rpetit3
modules/nf-core/abricate/summary/** @rpetit3
modules/nf-core/abritamr/run/** @rpetit3
modules/nf-core/adapterremovalfixprefix/** @jfy133
modules/nf-core/adapterremoval/** @maxibor @jfy133
modules/nf-core/admixture/** @atrigila
modules/nf-core/affy/justrma/** @pinin4fjords
modules/nf-core/agat/convertspgff2gtf/** @toniher
modules/nf-core/agat/convertspgxf2gxf/** @toniher
modules/nf-core/agat/spstatistics/** @toniher
modules/nf-core/agat/sqstatbasic/** @toniher
modules/nf-core/agrvate/** @abhi18av
modules/nf-core/allelecounter/** @fullama @fbdtemme
modules/nf-core/ampcombi/** @darcy220606 @louperelo
modules/nf-core/ampir/** @jasmezz
modules/nf-core/amplify/predict/** @louperelo
modules/nf-core/amps/** @jfy133
modules/nf-core/amrfinderplus/run/** @rpetit3 @louperelo @jfy133
modules/nf-core/amrfinderplus/update/** @rpetit3
modules/nf-core/angsd/contamination/** @jbv2
modules/nf-core/angsd/docounts/** @jfy133
modules/nf-core/annotsv/annotsv/** @nvnieuwk
modules/nf-core/annotsv/installannotations/** @nvnieuwk
modules/nf-core/antismash/antismashlitedownloaddatabases/** @jasmezz
modules/nf-core/antismash/antismashlite/** @jasmezz
modules/nf-core/arcashla/extract/** @christopher-mohr
modules/nf-core/aria2/** @JoseEspinosa
modules/nf-core/ariba/getref/** @rpetit3
modules/nf-core/ariba/run/** @rpetit3
modules/nf-core/arriba/arriba/** @praveenraj2018,@rannick
modules/nf-core/artic/guppyplex/** @joseespinosa @drpatelh
modules/nf-core/artic/minion/** @joseespinosa @drpatelh
modules/nf-core/art/illumina/** @MarieLataretu
modules/nf-core/ascat/** @aasNGC @lassefolkersen @FriederikeHanssen @maxulysse @SusiJo
modules/nf-core/ashlar/** @RobJY @jmuhlich
modules/nf-core/assemblyscan/** @sateeshperi @mjcipriano
modules/nf-core/ataqv/ataqv/** @i-pletenev
modules/nf-core/ataqv/mkarv/** @bjlang
modules/nf-core/atlas/call/** @jfy133
modules/nf-core/atlasgeneannotationmanipulation/gtf2featureannotation/** @pinin4fjords
modules/nf-core/atlas/pmd/** @maxibor @merszym
modules/nf-core/atlas/recal/** @ltcrod
modules/nf-core/atlas/splitmerge/** @merszym
modules/nf-core/authentict/deam2cont/** @scarlhoff @StephanePeyregne
modules/nf-core/backsub/** @kbestak
modules/nf-core/bacphlip/** @CarsonJM
modules/nf-core/bakta/baktadbdownload/** @jfy133 @jasmezz
modules/nf-core/bakta/bakta/** @rpetit3 @oschwengers @jfy133
modules/nf-core/bamaligncleaner/** @jfy133
modules/nf-core/bamcmp/** @kmurat1 @sppearce
modules/nf-core/bamtools/convert/** @sguizard
modules/nf-core/bamtools/split/** @sguizard @matthdsm
modules/nf-core/bamtools/stats/** @lescai
modules/nf-core/bamutil/trimbam/** @jfy133
modules/nf-core/bandage/image/** @heuermh
modules/nf-core/barrnap/** @danilodileo
modules/nf-core/bases2fastq/** @edmundmiller
modules/nf-core/basicpy/** @FloWuenne
modules/nf-core/bbmap/align/** @erikrikarddaniel
modules/nf-core/bbmap/bbduk/** @MGordon09
modules/nf-core/bbmap/bbnorm/** @danilodileo
modules/nf-core/bbmap/bbsplit/** @joseespinosa @drpatelh
modules/nf-core/bbmap/clumpify/** @tamuanand
modules/nf-core/bbmap/index/** @daniellundin
modules/nf-core/bbmap/pileup/** @edmundmiller
modules/nf-core/bbmap/sendsketch/** @phanhung2
modules/nf-core/bcftools/annotate/** @projectoriented @ramprasadn
modules/nf-core/bcftools/call/** @abhi18av @LouisLeNezet
modules/nf-core/bcftools/concat/** @abhi18av @nvnieuwk
modules/nf-core/bcftools/consensus/** @joseespinosa @drpatelh
modules/nf-core/bcftools/convert/** @nvnieuwk @ramprasadn @atrigila
modules/nf-core/bcftools/filter/** @joseespinosa @drpatelh
modules/nf-core/bcftools/index/** @jfy133
modules/nf-core/bcftools/isec/** @joseespinosa @drpatelh
modules/nf-core/bcftools/merge/** @joseespinosa @drpatelh @nvnieuwk @ramprasadn
modules/nf-core/bcftools/mpileup/** @joseespinosa @drpatelh
modules/nf-core/bcftools/norm/** @abhi18av @ramprasadn
modules/nf-core/bcftools/pluginscatter/** @nvnieuwk
modules/nf-core/bcftools/pluginsplit/** @nvnieuwk
modules/nf-core/bcftools/query/** @abhi18av @drpatelh
modules/nf-core/bcftools/reheader/** @bjohnnyd @jemten @ramprasadn
modules/nf-core/bcftools/roh/** @ramprasadn
modules/nf-core/bcftools/sort/** @Gwennid
modules/nf-core/bcftools/split/** @matthdsm @atrigila
modules/nf-core/bcftools/stats/** @joseespinosa @drpatelh @SusiJo @TCLamnidis
modules/nf-core/bcftools/view/** @abhi18av
modules/nf-core/bcl2fastq/** @matthdsm
modules/nf-core/bclconvert/** @matthdsm
modules/nf-core/beagle5/beagle/** @ashotmarg
modules/nf-core/bedtools/bamtobed/** @yuukiiwa @drpatelh
modules/nf-core/bedtools/closest/** @nvnieuwk
modules/nf-core/bedtools/complement/** @edmundmiller @sruthipsuresh @drpatelh
modules/nf-core/bedtools/coverage/** @priyanka-surana
modules/nf-core/bedtools/genomecov/** @edmundmiller @sruthipsuresh @drpatelh @sidorov-si @chris-cheshire
modules/nf-core/bedtools/getfasta/** @joseespinosa @drpatelh
modules/nf-core/bedtools/groupby/** @mashehu
modules/nf-core/bedtools/intersect/** @edmundmiller @sruthipsuresh @drpatelh @sidorov-si
modules/nf-core/bedtools/jaccard/** @nvnieuwk
modules/nf-core/bedtools/makewindows/** @kevbrick @nvnieuwk
modules/nf-core/bedtools/map/** @ekushele
modules/nf-core/bedtools/maskfasta/** @joseespinosa @drpatelh
modules/nf-core/bedtools/merge/** @edmundmiller @sruthipsuresh @drpatelh
modules/nf-core/bedtools/multiinter/** @matthdsm
modules/nf-core/bedtools/shift/** @ekushele
modules/nf-core/bedtools/slop/** @edmundmiller @sruthipsuresh @drpatelh
modules/nf-core/bedtools/sort/** @edmundmiller @sruthipsuresh @drpatelh @chris-cheshire @adamrtalbot
modules/nf-core/bedtools/split/** @nvnieuwk
modules/nf-core/bedtools/subtract/** @sidorov-si
modules/nf-core/bedtools/unionbedg/** @ekushele
modules/nf-core/bioawk/** @jfy133
modules/nf-core/biobambam/bammarkduplicates2/** @muffato
modules/nf-core/biobambam/bammerge/** @matthdsm
modules/nf-core/biobambam/bamsormadup/** @matthdsm
modules/nf-core/biohansel/** @rpetit3
modules/nf-core/biscuit/align/** @njspix
modules/nf-core/biscuit/biscuitblaster/** @njspix
modules/nf-core/biscuit/bsconv/** @njspix
modules/nf-core/biscuit/epiread/** @njspix
modules/nf-core/biscuit/index/** @njspix
modules/nf-core/biscuit/mergecg/** @njspix
modules/nf-core/biscuit/pileup/** @njspix
modules/nf-core/biscuit/qc/** @njspix
modules/nf-core/biscuit/vcf2bed/** @njspix
modules/nf-core/bismark/align/** @phue @FelixKrueger @ewels
modules/nf-core/bismark/coverage2cytosine/** @FelixKrueger @ewels
modules/nf-core/bismark/deduplicate/** @phue @FelixKrueger @ewels
modules/nf-core/bismark/genomepreparation/** @phue @FelixKrueger @ewels
modules/nf-core/bismark/methylationextractor/** @phue @FelixKrueger @ewels
modules/nf-core/bismark/report/** @phue @FelixKrueger @ewels
modules/nf-core/bismark/summary/** @phue @FelixKrueger @ewels
modules/nf-core/blast/blastn/** @joseespinosa @drpatelh @vagkaratzas
modules/nf-core/blast/blastp/** @vagkaratzas
modules/nf-core/blast/makeblastdb/** @joseespinosa @drpatelh @vagkaratzas
modules/nf-core/blast/tblastn/** @yumisims @gq2 @vagkaratzas
modules/nf-core/blat/** @d-jch
modules/nf-core/bowtie2/align/** @joseespinosa @drpatelh
modules/nf-core/bowtie2/build/** @joseespinosa @drpatelh
modules/nf-core/bowtie/align/** @kevinmenden
modules/nf-core/bowtie/build/** @kevinmenden @drpatelh
modules/nf-core/bracken/bracken/** @Midnighter
modules/nf-core/bracken/combinebrackenoutputs/** @jfy133
modules/nf-core/busco/** @priyanka-surana @charles-plessy @mahesh-panchal @muffato @jvhagey
modules/nf-core/bwa/aln/** @jfy133
modules/nf-core/bwa/index/** @drpatelh @maxulysse
modules/nf-core/bwamem2/index/** @maxulysse
modules/nf-core/bwamem2/mem/** @maxulysse
modules/nf-core/bwa/mem/** @drpatelh @jeremy1805
modules/nf-core/bwameth/align/** @phue
modules/nf-core/bwameth/index/** @phue
modules/nf-core/bwa/sampe/** @jfy133
modules/nf-core/bwa/samse/** @jfy133
modules/nf-core/cadd/** @ramprasadn
modules/nf-core/calder2/** @lucananni93
modules/nf-core/canu/** @scorreard
modules/nf-core/cat/cat/** @erikrikarddaniel @FriederikeHanssen
modules/nf-core/cat/fastq/** @joseespinosa @drpatelh
modules/nf-core/cdhit/cdhitest/** @Joon-Klaps
modules/nf-core/cdhit/cdhit/** @timslittle
modules/nf-core/cellpose/** @josenimo
modules/nf-core/cellrangeratac/count/** @ggabernet @edmundmiller @heylf
modules/nf-core/cellrangeratac/mkfastq/** @ggabernet @edmundmiller @RHReynolds @heylf
modules/nf-core/cellrangeratac/mkref/** @ggabernet @heylf
modules/nf-core/cellranger/count/** @ggabernet @edmundmiller
modules/nf-core/cellranger/mkfastq/** @ggabernet @edmundmiller @RHReynolds
modules/nf-core/cellranger/mkgtf/** @ggabernet @edmundmiller
modules/nf-core/cellranger/mkref/** @ggabernet
modules/nf-core/cellranger/mkvdjref/** @ggabernet @klkeys
modules/nf-core/cellranger/multi/** @klkeys
modules/nf-core/cellranger/vdj/** @ggabernet @edmundmiller @klkeys
modules/nf-core/centrifuge/centrifuge/** @sofstam @jfy133 @sateeshperi
modules/nf-core/centrifuge/kreport/** @sofstam @jfy133
modules/nf-core/checkm/lineagewf/** @jfy133
modules/nf-core/checkm/qa/** @jfy133
modules/nf-core/checkv/downloaddatabase/** @Joon-Klaps
modules/nf-core/checkv/endtoend/** @Joon-Klaps
modules/nf-core/checkv/updatedatabase/** @Joon-Klaps
modules/nf-core/chopper/** @FynnFreyer
modules/nf-core/chromap/chromap/** @mahesh-panchal @joseespinosa
modules/nf-core/chromap/index/** @mahesh-panchal @joseespinosa
modules/nf-core/chromograph/** @ramprasadn
modules/nf-core/circexplorer2/annotate/** @BarryDigby
modules/nf-core/circexplorer2/parse/** @BarryDigby
modules/nf-core/clippy/** @marc-jones @CharlotteAnne
modules/nf-core/clonalframeml/** @rpetit3
modules/nf-core/clustalo/align/** @luisas
modules/nf-core/clustalo/guidetree/** @luisas
modules/nf-core/cmseq/polymut/** @maxibor
modules/nf-core/cnvkit/access/** @adamrtalbot @priesgo
modules/nf-core/cnvkit/antitarget/** @adamrtalbot @priesgo @SusiJo
modules/nf-core/cnvkit/batch/** @adamrtalbot @drpatelh @fbdtemme @kaurravneet4123 @KevinMenden @lassefolkersen @MaxUlysse @priesgo @SusiJo
modules/nf-core/cnvkit/call/** @adamrtalbot @priesgo
modules/nf-core/cnvkit/export/** @adamrtalbot @priesgo
modules/nf-core/cnvkit/genemetrics/** @adamrtalbot @marrip @priesgo
modules/nf-core/cnvkit/reference/** @adamrtalbot @priesgo @SusiJo
modules/nf-core/cnvkit/target/** @adamrtalbot @priesgo
modules/nf-core/cnvnator/cnvnator/** @ramprasadn
modules/nf-core/cnvnator/convert2vcf/** @ramprasadn
modules/nf-core/cnvpytor/callcnvs/** @sima-r
modules/nf-core/cnvpytor/histogram/** @sima-r @ramprasadn
modules/nf-core/cnvpytor/importreaddepth/** @sima-r @ramprasadn
modules/nf-core/cnvpytor/partition/** @sima-r @ramprasadn
modules/nf-core/cnvpytor/view/** @sima-r @ramprasadn
modules/nf-core/concoct/concoctcoveragetable/** @jfy133
modules/nf-core/concoct/concoct/** @jfy133
modules/nf-core/concoct/cutupfasta/** @jfy133
modules/nf-core/concoct/extractfastabins/** @jfy133
modules/nf-core/concoct/mergecutupclustering/** @jfy133
modules/nf-core/conifer/** @icaromsc @rpetit3
modules/nf-core/controlfreec/assesssignificance/** @FriederikeHanssen
modules/nf-core/controlfreec/freec2bed/** @FriederikeHanssen
modules/nf-core/controlfreec/freec2circos/** @FriederikeHanssen
modules/nf-core/controlfreec/freec/** @FriederikeHanssen
modules/nf-core/controlfreec/makegraph/** @FriederikeHanssen
modules/nf-core/cooler/balance/** @nservant @muffato
modules/nf-core/cooler/cload/** @jianhong @muffato
modules/nf-core/cooler/digest/** @jianhong
modules/nf-core/cooler/dump/** @jianhong @muffato
modules/nf-core/cooler/makebins/** @nservant @muffato
modules/nf-core/cooler/merge/** @jianhong
modules/nf-core/cooler/zoomify/** @jianhong
modules/nf-core/coreograph/** @arozhada @MargotCh
modules/nf-core/crisprcleanr/normalize/** @LaurenceKuhl
modules/nf-core/crumble/** @priyanka-surana
modules/nf-core/csvtk/concat/** @rpetit3
modules/nf-core/csvtk/join/** @anoronh4
modules/nf-core/csvtk/split/** @SusiJo
modules/nf-core/custom/dumpsoftwareversions/** @drpatelh @grst
modules/nf-core/custom/getchromsizes/** @tamara-hodgetts @chris-cheshire @muffato
modules/nf-core/custom/matrixfilter/** @pinin4fjords
modules/nf-core/custom/sratoolsncbisettings/** @Midnighter
modules/nf-core/custom/tabulartogseacls/** @pinin4fjords
modules/nf-core/custom/tabulartogseagct/** @pinin4fjords
modules/nf-core/cutadapt/** @drpatelh @kevinmenden
modules/nf-core/cutesv/** @christopher-hakkaart @yuukiiwa
modules/nf-core/damageprofiler/** @jfy133
modules/nf-core/dastool/dastool/** @maxibor @jfy133
modules/nf-core/dastool/fastatocontig2bin/** @maxibor @jfy133
modules/nf-core/dastool/scaffolds2bin/** @maxibor
modules/nf-core/dedup/** @jfy133
modules/nf-core/deeparg/downloaddata/** @jfy133
modules/nf-core/deeparg/predict/** @jfy133
modules/nf-core/deepbgc/download/** @louperelo
modules/nf-core/deepbgc/pipeline/** @louperelo @jfy133
modules/nf-core/deepcell/mesmer/** @migueLib @chiarasch
modules/nf-core/deeptmhmm/** @vagkaratzas
modules/nf-core/deeptools/bamcoverage/** @FriederikeHanssen @SusiJo
modules/nf-core/deeptools/computematrix/** @jeremy1805 @edmundmiller @drpatelh @joseespinosa
modules/nf-core/deeptools/multibamsummary/** @tamara-hodgetts @chris-cheshire
modules/nf-core/deeptools/plotcorrelation/** @tamara-hodgetts @chris-cheshire
modules/nf-core/deeptools/plotfingerprint/** @edmundmiller @drpatelh @joseespinosa
modules/nf-core/deeptools/plotheatmap/** @edmundmiller @drpatelh @joseespinosa
modules/nf-core/deeptools/plotpca/** @tamara-hodgetts @chris-cheshire
modules/nf-core/deeptools/plotprofile/** @edmundmiller @drpatelh @joseespinosa
modules/nf-core/deepvariant/** @abhi18av @ramprasadn
modules/nf-core/delly/call/** @projectoriented @nvnieuwk
modules/nf-core/deseq2/differential/** @pinin4fjords
modules/nf-core/diamond/blastp/** @spficklin @jfy133
modules/nf-core/diamond/blastx/** @spficklin @jfy133 @mjamy
modules/nf-core/diamond/makedb/** @spficklin
modules/nf-core/dragmap/align/** @edmundmiller
modules/nf-core/dragmap/hashtable/** @edmundmiller
modules/nf-core/dragonflye/** @rpetit3
modules/nf-core/dshbio/exportsegments/** @heuermh
modules/nf-core/dshbio/filterbed/** @heuermh
modules/nf-core/dshbio/filtergff3/** @heuermh
modules/nf-core/dshbio/splitbed/** @heuermh
modules/nf-core/dshbio/splitgff3/** @heuermh
modules/nf-core/duphold/** @nvnieuwk
modules/nf-core/ectyper/** @rpetit3
modules/nf-core/eido/convert/** @rafalstepien
modules/nf-core/eido/validate/** @rafalstepien
modules/nf-core/eigenstratdatabasetools/eigenstratsnpcoverage/** @TCLamnidis
modules/nf-core/eklipse/** @Lucpen
modules/nf-core/elprep/filter/** @matthdsm
modules/nf-core/elprep/merge/** @matthdsm
modules/nf-core/elprep/split/** @matthdsm
modules/nf-core/emboss/cons/** @Joon-Klaps
modules/nf-core/emboss/revseq/** @erikrikarddaniel
modules/nf-core/emboss/seqret/** @MillironX
modules/nf-core/emmtyper/** @rpetit3
modules/nf-core/endorspy/** @aidaanva
modules/nf-core/ensemblvep/download/** @maxulysse
modules/nf-core/ensemblvep/filtervep/** @ramprasadn
modules/nf-core/ensemblvep/vep/** @maxulysse @matthdsm @nvnieuwk
modules/nf-core/entrezdirect/esearch/** @alxndrdiaz
modules/nf-core/entrezdirect/esummary/** @alxndrdiaz
modules/nf-core/entrezdirect/xtract/** @alxndrdiaz
modules/nf-core/epang/place/** @erikrikarddaniel
modules/nf-core/epang/split/** @erikrikarddaniel
modules/nf-core/expansionhunterdenovo/merge/** @nvnieuwk
modules/nf-core/expansionhunterdenovo/profile/** @nvnieuwk
modules/nf-core/expansionhunter/** @jemten
modules/nf-core/falco/** @lucacozzuto
modules/nf-core/famsa/align/** @luisas
modules/nf-core/famsa/guidetree/** @luisas
modules/nf-core/faqcs/** @mjcipriano @sateeshperi @hseabolt
modules/nf-core/fargene/** @louperelo
modules/nf-core/fastani/** @abhi18av
modules/nf-core/fastawindows/** @muffato
modules/nf-core/fastk/fastk/** @mahesh-panchal
modules/nf-core/fastk/histex/** @mahesh-panchal
modules/nf-core/fastk/merge/** @mahesh-panchal
modules/nf-core/fastp/** @drpatelh @kevinmenden
modules/nf-core/fastqc/** @drpatelh @grst @FelixKrueger
modules/nf-core/fastqscan/** @rpetit3
modules/nf-core/fasttree/** @aunderwo
modules/nf-core/fcs/fcsadaptor/** @d4straub
modules/nf-core/fcs/fcsgx/** @tillenglert
modules/nf-core/ffq/** @drpatelh
modules/nf-core/fgbio/callduplexconsensusreads/** @lescai
modules/nf-core/fgbio/callmolecularconsensusreads/** @sruthipsuresh
modules/nf-core/fgbio/fastqtobam/** @lescai @matthdsm
modules/nf-core/fgbio/filterconsensusreads/** @lescai
modules/nf-core/fgbio/groupreadsbyumi/** @lescai
modules/nf-core/fgbio/sortbam/** @sruthipsuresh
modules/nf-core/fgbio/zipperbams/** @lescai
modules/nf-core/filtlong/** @d4straub @sofstam
modules/nf-core/flash/** @Erkison
modules/nf-core/flye/** @mirpedrol
modules/nf-core/fq/generate/** @adamrtalbot
modules/nf-core/fq/lint/** @adamrtalbot
modules/nf-core/fq/subsample/** @adamrtalbot
modules/nf-core/fqtk/** @nh13 @sam-white04
modules/nf-core/freebayes/** @maxibor @FriederikeHanssen @maxulysse
modules/nf-core/freyja/boot/** @Joon-Klaps
modules/nf-core/freyja/demix/** @Joon-Klaps
modules/nf-core/freyja/update/** @Joon-Klaps
modules/nf-core/freyja/variants/** @Joon-Klaps
modules/nf-core/galah/** @prototaxites
modules/nf-core/gamma/gamma/** @sateeshperi @rastanton @jvhagey
modules/nf-core/gangstr/** @nvnieuwk
modules/nf-core/ganon/buildcustom/** @jfy133
modules/nf-core/ganon/classify/** @jfy133
modules/nf-core/ganon/report/** @jfy133
modules/nf-core/ganon/table/** @jfy133
modules/nf-core/gappa/examineassign/** @erikrikarddaniel
modules/nf-core/gappa/examinegraft/** @erikrikarddaniel
modules/nf-core/gappa/examineheattree/** @erikrikarddaniel
modules/nf-core/gatk4/annotateintervals/** @nvnieuwk
modules/nf-core/gatk4/applybqsrspark/** @yocra3 @FriederikeHanssen @maxulysse
modules/nf-core/gatk4/applybqsr/** @yocra3 @FriederikeHanssen
modules/nf-core/gatk4/applyvqsr/** @GCJMackenzie
modules/nf-core/gatk4/asereadcounter/** @Lucpen
modules/nf-core/gatk4/baserecalibratorspark/** @yocra3 @FriederikeHanssen @maxulysse
modules/nf-core/gatk4/baserecalibrator/** @yocra3 @FriederikeHanssen @maxulysse
modules/nf-core/gatk4/bedtointervallist/** @kevinmenden @ramprasadn
modules/nf-core/gatk4/calculatecontamination/** @GCJMackenzie @maxulysse
modules/nf-core/gatk4/calibratedragstrmodel/** @nvnieuwk
modules/nf-core/gatk4/cnnscorevariants/** @FriederikeHanssen
modules/nf-core/gatk4/collectreadcounts/** @nvnieuwk
modules/nf-core/gatk4/collectsvevidence/** @nvnieuwk
modules/nf-core/gatk4/combinegvcfs/** @sateeshperi @mjcipriano @hseabolt @maxulysse
modules/nf-core/gatk4/composestrtablefile/** @nvnieuwk
modules/nf-core/gatk4/condensedepthevidence/** @nvnieuwk
modules/nf-core/gatk4/createreadcountpanelofnormals/** @ramprasadn
modules/nf-core/gatk4/createsequencedictionary/** @maxulysse @ramprasadn
modules/nf-core/gatk4/createsomaticpanelofnormals/** @GCJMackenzie
modules/nf-core/gatk4/denoisereadcounts/** @ramprasadn
modules/nf-core/gatk4/determinegermlinecontigploidy/** @nvnieuwk
modules/nf-core/gatk4/estimatelibrarycomplexity/** @FriederikeHanssen @maxulysse
modules/nf-core/gatk4/fastqtosam/** @ntoda03
modules/nf-core/gatk4/filterintervals/** @ryanjameskennedy @ViktorHy
modules/nf-core/gatk4/filtermutectcalls/** @GCJMackenzie @maxulysse @ramprasadn
modules/nf-core/gatk4/filtervarianttranches/** @FriederikeHanssen
modules/nf-core/gatk4/gatherbqsrreports/** @FriederikeHanssen
modules/nf-core/gatk4/gatherpileupsummaries/** @FriederikeHanssen @maxulysse
modules/nf-core/gatk4/genomicsdbimport/** @GCJMackenzie
modules/nf-core/gatk4/genotypegvcfs/** @santiagorevale @maxulysse
modules/nf-core/gatk4/germlinecnvcaller/** @ryanjameskennedy @ViktorHy
modules/nf-core/gatk4/getpileupsummaries/** @GCJMackenzie
modules/nf-core/gatk4/haplotypecaller/** @suzannejin @FriederikeHanssen
modules/nf-core/gatk4/indexfeaturefile/** @santiagorevale
modules/nf-core/gatk4/intervallisttobed/** @FriederikeHanssen
modules/nf-core/gatk4/intervallisttools/** @praveenraj2018
modules/nf-core/gatk4/learnreadorientationmodel/** @GCJMackenzie
modules/nf-core/gatk4/leftalignandtrimvariants/** @adamrtalbot
modules/nf-core/gatk4/markduplicates/** @ajodeh-juma @FriederikeHanssen @maxulysse
modules/nf-core/gatk4/markduplicatesspark/** @ajodeh-juma @FriederikeHanssen @maxulysse @SusiJo
modules/nf-core/gatk4/mergebamalignment/** @kevinmenden @ramprasadn
modules/nf-core/gatk4/mergemutectstats/** @FriederikeHanssen
modules/nf-core/gatk4/mergevcfs/** @kevinmenden
modules/nf-core/gatk4/mutect2/** @GCJMackenzie @ramprasadn
modules/nf-core/gatk4/postprocessgermlinecnvcalls/** @ryanjameskennedy
modules/nf-core/gatk4/preprocessintervals/** @ryanjameskennedy @ViktorHy @ramprasadn
modules/nf-core/gatk4/printreads/** @ramprasadn
modules/nf-core/gatk4/printsvevidence/** @nvnieuwk
modules/nf-core/gatk4/reblockgvcf/** @nvnieuwk
modules/nf-core/gatk4/revertsam/** @kevinmenden
modules/nf-core/gatk4/samtofastq/** @kevinmenden
modules/nf-core/gatk4/selectvariants/** @mjcipriano @ramprasadn
modules/nf-core/gatk4/shiftfasta/** @ramprasadn
modules/nf-core/gatk4/sitedepthtobaf/** @nvnieuwk
modules/nf-core/gatk4/splitcram/** @nvnieuwk
modules/nf-core/gatk4/splitintervals/** @nvnieuwk @ramprasadn
modules/nf-core/gatk4/splitncigarreads/** @kevinmenden
modules/nf-core/gatk4/svannotate/** @nvnieuwk
modules/nf-core/gatk4/svcluster/** @nvnieuwk
modules/nf-core/gatk4/variantfiltration/** @kevinmenden @ramprasadn
modules/nf-core/gatk4/variantrecalibrator/** @GCJMackenzie @nickhsmith
modules/nf-core/gatk/indelrealigner/** @jfy133
modules/nf-core/gatk/realignertargetcreator/** @jfy133
modules/nf-core/gatk/unifiedgenotyper/** @ilight1542 @jfy133
modules/nf-core/gawk/** @nvnieuwk
modules/nf-core/gecco/run/** @jfy133
modules/nf-core/gem2/gem2bedmappability/** @nvnieuwk
modules/nf-core/gem2/gemindexer/** @nvnieuwk
modules/nf-core/gem2/gemmappability/** @nvnieuwk
modules/nf-core/gem3/gem3indexer/** @miqalvarez
modules/nf-core/genescopefk/** @mahesh-panchal
modules/nf-core/genmap/index/** @jianhong @nvnieuwk
modules/nf-core/genmap/map/** @jianhong @nvnieuwk
modules/nf-core/genmod/annotate/** @ramprasadn
modules/nf-core/genmod/compound/** @ramprasadn
modules/nf-core/genmod/models/** @ramprasadn
modules/nf-core/genmod/score/** @ramprasadn
modules/nf-core/genomad/download/** @CarsonJM
modules/nf-core/genomad/endtoend/** @CarsonJM
modules/nf-core/genomescope2/** @mahesh-panchal
modules/nf-core/genotyphi/parse/** @rpetit3
modules/nf-core/genrich/** @JoseEspinosa @samuelruizperez
modules/nf-core/geoquery/getgeo/** @azedinez @pinin4fjords
modules/nf-core/gfaffix/** @heuermh
modules/nf-core/gfastats/** @mahesh-panchal
modules/nf-core/gfatools/gfa2fa/** @mahesh-panchal
modules/nf-core/gfatools/stat/** @mahesh-panchal
modules/nf-core/gffcompare/** @jemten
modules/nf-core/gffread/** @edmundmiller
modules/nf-core/gget/gget/** @adamrtalbot
modules/nf-core/glimpse2/chunk/** @louislenezet
modules/nf-core/glimpse2/concordance/** @louislenezet
modules/nf-core/glimpse2/ligate/** @louislenezet
modules/nf-core/glimpse2/phase/** @LouisLeNezet
modules/nf-core/glimpse2/splitreference/** @LouisLeNezet
modules/nf-core/glimpse/chunk/** @louislenezet
modules/nf-core/glimpse/concordance/** @louislenezet
modules/nf-core/glimpse/ligate/** @louislenezet
modules/nf-core/glimpse/phase/** @louislenezet
modules/nf-core/glimpse/sample/** @louislenezet
modules/nf-core/glnexus/** @ramprasadn
modules/nf-core/gnu/sort/** @DLBPointon
modules/nf-core/goat/taxonsearch/** @alxndrdiaz @muffato
modules/nf-core/goleft/indexcov/** @lindenb
modules/nf-core/goleft/indexsplit/** @matthdsm
modules/nf-core/graphmap2/align/** @yuukiiwa @drpatelh
modules/nf-core/graphmap2/index/** @yuukiiwa @drpatelh
modules/nf-core/graphtyper/genotype/** @zachary-foster
modules/nf-core/graphtyper/vcfconcatenate/** @zachary-foster
modules/nf-core/gridss/gridss/** @nvnieuwk
modules/nf-core/gsea/gsea/** @pinin4fjords
modules/nf-core/gstama/collapse/** @sguizard
modules/nf-core/gstama/merge/** @sguizard
modules/nf-core/gstama/polyacleanup/** @sguizard
modules/nf-core/gtdbtk/classifywf/** @skrakau @abhi18av
modules/nf-core/gubbins/** @avantonder
modules/nf-core/gunc/downloaddb/** @jfy133
modules/nf-core/gunc/mergecheckm/** @jfy133
modules/nf-core/gunc/run/** @jfy133
modules/nf-core/gunzip/** @joseespinosa @drpatelh @jfy133
modules/nf-core/gvcftools/extractvariants/** @nvnieuwk
modules/nf-core/hamronization/abricate/** @jasmezz
modules/nf-core/hamronization/amrfinderplus/** @louperelo
modules/nf-core/hamronization/deeparg/** @jfy133
modules/nf-core/hamronization/fargene/** @jfy133
modules/nf-core/hamronization/rgi/** @louperelo
modules/nf-core/hamronization/summarize/** @jfy133
modules/nf-core/hapibd/** @ashotmarg
modules/nf-core/haplocheck/** @lmtani
modules/nf-core/haplogrep2/classify/** @lucpen
modules/nf-core/happy/happy/** @nvnieuwk
modules/nf-core/happy/prepy/** @nvnieuwk
modules/nf-core/hicap/** @rpetit3
modules/nf-core/hicexplorer/hicpca/** @jianhong
modules/nf-core/hifiasm/** @sidorov-si @scorreard
modules/nf-core/hisat2/align/** @ntoda03 @ramprasadn
modules/nf-core/hisat2/build/** @ntoda03
modules/nf-core/hisat2/extractsplicesites/** @ntoda03 @ramprasadn
modules/nf-core/hlala/preparegraph/** @mapo9
modules/nf-core/hlala/typing/** @mapo9
modules/nf-core/hmmcopy/gccounter/** @sppearce @adamrtalbot
modules/nf-core/hmmcopy/generatemap/** @sppearce @adamrtalbot
modules/nf-core/hmmcopy/mapcounter/** @sppearce
modules/nf-core/hmmcopy/readcounter/** @sppearce
modules/nf-core/hmmer/eslalimask/** @erikrikarddaniel
modules/nf-core/hmmer/eslreformat/** @erikrikarddaniel
modules/nf-core/hmmer/hmmalign/** @erikrikarddaniel @jfy133
modules/nf-core/hmmer/hmmbuild/** @erikrikarddaniel
modules/nf-core/hmmer/hmmfetch/** @erikrikarddaniel
modules/nf-core/hmmer/hmmsearch/** @Midnighter
modules/nf-core/hmtnote/annotate/** @sysbiocoder
modules/nf-core/homer/annotatepeaks/** @drpatelh @kevinmenden
modules/nf-core/homer/findpeaks/** @edmundmiller
modules/nf-core/homer/maketagdirectory/** @edmundmiller
modules/nf-core/homer/makeucscfile/** @edmundmiller
modules/nf-core/homer/pos2bed/** @edmundmiller
modules/nf-core/hpsuissero/** @rpetit3
modules/nf-core/htseq/count/** @zehrahazalsezer
modules/nf-core/hypo/** @remiolsen
modules/nf-core/ichorcna/createpon/** @sppearce
modules/nf-core/ichorcna/run/** @sppearce
modules/nf-core/icountmini/metagene/** @marc-jones @chris-cheshire @charlotteanne
modules/nf-core/icountmini/peaks/** @marc-jones @chris-cheshire @charlotteanne
modules/nf-core/icountmini/segment/** @marc-jones @chris-cheshire @charlotteanne
modules/nf-core/icountmini/sigxls/** @marc-jones @chris-cheshire @charlotteanne
modules/nf-core/icountmini/summary/** @marc-jones @chris-cheshire @charlotteanne
modules/nf-core/idr/** @drpatelh @joseespinosa
modules/nf-core/igv/js/** @mirpedrol
modules/nf-core/ilastik/multicut/** @FloWuenne
modules/nf-core/ilastik/pixelclassification/** @FloWuenne
modules/nf-core/instrain/compare/** @margotl9 @CarsonJM
modules/nf-core/instrain/profile/** @mrolm
modules/nf-core/interproscan/** @toniher
modules/nf-core/iphop/download/** @CarsonJM
modules/nf-core/iphop/predict/** @CarsonJM
modules/nf-core/iqtree/** @avantonder @aunderwo
modules/nf-core/islandpath/** @jvfe
modules/nf-core/ismapper/** @rpetit3
modules/nf-core/isoseq3/cluster/** @sguizard
modules/nf-core/isoseq3/refine/** @sguizard
modules/nf-core/ivar/consensus/** @andersgs @drpatelh
modules/nf-core/ivar/trim/** @andersgs @drpatelh
modules/nf-core/ivar/variants/** @andersgs @drpatelh
modules/nf-core/jasminesv/** @nvnieuwk
modules/nf-core/jupyternotebook/** @grst
modules/nf-core/kaiju/kaiju2krona/** @MillironX
modules/nf-core/kaiju/kaiju2table/** @sofstam @talnor @jfy133
modules/nf-core/kaiju/kaiju/** @talnor @sofstam @jfy133
modules/nf-core/kalign/align/** @luisas
modules/nf-core/kallistobustools/count/** @flowuenne
modules/nf-core/kallistobustools/ref/** @flowuenne
modules/nf-core/kallisto/index/** @ggabernet
modules/nf-core/kallisto/quant/** @anoronh4
modules/nf-core/kat/hist/** @mahesh-panchal
modules/nf-core/khmer/normalizebymedian/** @erikrikarddaniel
modules/nf-core/khmer/uniquekmers/** @JoseEspinosa
modules/nf-core/kleborate/** @abhi18av @rpetit3
modules/nf-core/kmcp/compute/** @sofstam
modules/nf-core/kmcp/index/** @sofstam
modules/nf-core/kmcp/merge/** @sofstam
modules/nf-core/kmcp/profile/** @sofstam
modules/nf-core/kmcp/search/** @sofstam
modules/nf-core/kofamscan/** @toniher
modules/nf-core/kraken2/kraken2/** @joseespinosa @drpatelh
modules/nf-core/krakentools/combinekreports/** @jfy133
modules/nf-core/krakentools/kreport2krona/** @MillironX
modules/nf-core/krakenuniq/build/** @jfy133
modules/nf-core/krakenuniq/download/** @jfy133
modules/nf-core/krakenuniq/preloadedkrakenuniq/** @mjamy @Midnighter
modules/nf-core/krona/kronadb/** @mjakobs
modules/nf-core/krona/ktimporttaxonomy/** @mjakobs
modules/nf-core/krona/ktimporttext/** @jianhong
modules/nf-core/krona/ktupdatetaxonomy/** @mjakobs
modules/nf-core/last/dotplot/** @charles-plessy
modules/nf-core/last/lastal/** @charles-plessy
modules/nf-core/last/lastdb/** @charles-plessy
modules/nf-core/last/mafconvert/** @aleksandrabliznina
modules/nf-core/last/mafswap/** @charles-plessy
modules/nf-core/last/postmask/** @charles-plessy
modules/nf-core/last/split/** @aleksandrabliznina
modules/nf-core/last/train/** @aleksandrabliznina
modules/nf-core/learnmsa/align/** @luisas
modules/nf-core/leehom/** @jfy133
modules/nf-core/legsta/** @rpetit3
modules/nf-core/lima/** @sguizard
modules/nf-core/limma/differential/** @pinin4fjords
modules/nf-core/lissero/** @rpetit3
modules/nf-core/lofreq/call/** @bjohnnyd
modules/nf-core/lofreq/callparallel/** @kaurravneet4123 @bjohnnyd
modules/nf-core/lofreq/filter/** @bjohnnyd
modules/nf-core/lofreq/indelqual/** @kaurravneet4123
modules/nf-core/lofreq/somatic/** @nevinwu
modules/nf-core/macrel/contigs/** @darcy220606
modules/nf-core/macs2/callpeak/** @ntoda03 @JoseEspinosa @jianhong
modules/nf-core/mafft/** @MillironX
modules/nf-core/mageck/count/** @LaurenceKuhl
modules/nf-core/mageck/mle/** @LaurenceKuhl
modules/nf-core/mageck/test/** @LaurenceKuhl
modules/nf-core/malt/build/** @jfy133
modules/nf-core/maltextract/** @jfy133
modules/nf-core/malt/run/** @jfy133
modules/nf-core/manta/convertinversion/** @FriederikeHanssen
modules/nf-core/manta/germline/** @maxulysse @ramprasadn @nvnieuwk
modules/nf-core/manta/somatic/** @FriederikeHanssen @nvnieuwk
modules/nf-core/manta/tumoronly/** @maxulysse @nvnieuwk
modules/nf-core/mapad/index/** @jch-13
modules/nf-core/mapad/map/** @jch-13
modules/nf-core/mapdamage2/** @darcy220606
modules/nf-core/mash/dist/** @rpetit3
modules/nf-core/mash/screen/** @mahesh-panchal
modules/nf-core/mash/sketch/** @thanhleviet
modules/nf-core/mashtree/** @rpetit3
modules/nf-core/maxbin2/** @jfy133
modules/nf-core/maxquant/lfq/** @veitveit
modules/nf-core/mcquant/** @FloWuenne
modules/nf-core/mcroni/** @rpetit3
modules/nf-core/md5sum/** @matthdsm
modules/nf-core/medaka/** @avantonder
modules/nf-core/megahit/** @jfy133
modules/nf-core/megan/daa2info/** @jfy133
modules/nf-core/megan/rma2info/** @jfy133
modules/nf-core/meningotype/** @rpetit3
modules/nf-core/merquryfk/katcomp/** @mahesh-panchal
modules/nf-core/merquryfk/katgc/** @mahesh-panchal
modules/nf-core/merquryfk/merquryfk/** @mahesh-panchal
modules/nf-core/merquryfk/ploidyplot/** @mahesh-panchal
modules/nf-core/merqury/** @mahesh-panchal
modules/nf-core/meryl/count/** @mahesh-panchal
modules/nf-core/meryl/histogram/** @mahesh-panchal
modules/nf-core/meryl/unionsum/** @mahesh-panchal
modules/nf-core/metabat2/jgisummarizebamcontigdepths/** @maxibor
modules/nf-core/metabat2/metabat2/** @maxibor @jfy133
modules/nf-core/metaeuk/easypredict/** @prototaxites
modules/nf-core/metaphlan3/mergemetaphlantables/** @jfy133
modules/nf-core/metaphlan3/metaphlan3/** @MGordon09
modules/nf-core/metaphlan/makedb/** @LilyAnderssonLee
modules/nf-core/metaphlan/mergemetaphlantables/** @jfy133 @LilyAnderssonLee
modules/nf-core/metaphlan/metaphlan/** @MGordon09 @LilyAnderssonLee
modules/nf-core/methyldackel/extract/** @phue
modules/nf-core/methyldackel/mbias/** @phue
modules/nf-core/midas/run/** @rpetit3
modules/nf-core/mindagap/mindagap/** @ViriatoII @flowuenne
modules/nf-core/minia/** @drpatelh @kevinmenden
modules/nf-core/miniasm/** @avantonder
modules/nf-core/minimap2/align/** @heuermh @sofstam @sateeshperi @jfy133
modules/nf-core/minimap2/index/** @yuukiiwa @drpatelh
modules/nf-core/miniprot/align/** @yumisims @muffato
modules/nf-core/miniprot/index/** @yumisims @muffato
modules/nf-core/miranda/** @BarryDigby
modules/nf-core/mitohifi/findmitoreference/** @verku
modules/nf-core/mitohifi/mitohifi/** @ksenia-krasheninnikova
modules/nf-core/mlst/** @lskatz @tseemann
modules/nf-core/mmseqs/cluster/** @Joon-Klaps
modules/nf-core/mmseqs/createdb/** @Joon-Klaps
modules/nf-core/mmseqs/createindex/** @JoseEspinosa
modules/nf-core/mmseqs/createtsv/** @Joon-Klaps
modules/nf-core/mmseqs/databases/** @prototaxites
modules/nf-core/mmseqs/easysearch/** @luisas
modules/nf-core/mmseqs/linclust/** @vagkaratzas
modules/nf-core/mmseqs/search/** @Joon-Klaps
modules/nf-core/mmseqs/tsv2exprofiledb/** @JoseEspinosa
modules/nf-core/mobsuite/recon/** @rpetit3
modules/nf-core/mosdepth/** @joseespinosa @drpatelh @ramprasadn @matthdsm
modules/nf-core/motus/downloaddb/** @jianhong
modules/nf-core/motus/merge/** @jfy133
modules/nf-core/motus/profile/** @jianhong
modules/nf-core/msisensor2/msi/** @adamrtalbot
modules/nf-core/msisensor2/scan/** @adamrtalbot
modules/nf-core/msisensor/msi/** @kevbrick
modules/nf-core/msisensorpro/msisomatic/** @FriederikeHanssen
modules/nf-core/msisensorpro/scan/** @FriederikeHanssen
modules/nf-core/msisensor/scan/** @kevbrick
modules/nf-core/mtnucratio/** @louperelo
modules/nf-core/multiqc/** @abhi18av @bunop @drpatelh @jfy133 @ewels
modules/nf-core/multivcfanalyzer/** @jfy133
modules/nf-core/mummer/** @mjcipriano @sateeshperi
modules/nf-core/muscle5/super5/** @alessiovignoli
modules/nf-core/muscle/** @MGordon
modules/nf-core/mykrobe/predict/** @rpetit3
modules/nf-core/nanocomp/** @paulwolk
modules/nf-core/nanolyse/** @yuukiiwa
modules/nf-core/nanomonsv/parse/** @awgymer
modules/nf-core/nanoplot/** @drpatelh @yuukiiwa
modules/nf-core/ncbigenomedownload/** @rpetit3
modules/nf-core/nextclade/datasetget/** @antunderwood @drpatelh
modules/nf-core/nextclade/run/** @antunderwood @drpatelh
modules/nf-core/nextgenmap/** @cmatkhan
modules/nf-core/ngmaster/** @rpetit3
modules/nf-core/ngmerge/** @charlotteanne @jsh58
modules/nf-core/ngsbits/samplegender/** @nvnieuwk
modules/nf-core/ngscheckmate/fastq/** @sppearce
modules/nf-core/ngscheckmate/ncm/** @sppearce
modules/nf-core/ngscheckmate/patterngenerator/** @sppearce
modules/nf-core/ngscheckmate/vafncm/** @sppearce
modules/nf-core/nonpareil/nonpareil/** @jfy133
modules/nf-core/nonpareil/curve/** @jfy133
modules/nf-core/nucmer/** @sateeshperi @mjcipriano
modules/nf-core/odgi/build/** @subwaystation
modules/nf-core/odgi/draw/** @subwaystation
modules/nf-core/odgi/layout/** @subwaystation
modules/nf-core/odgi/sort/** @subwaystation
modules/nf-core/odgi/squeeze/** @subwaystation
modules/nf-core/odgi/stats/** @subwaystation
modules/nf-core/odgi/unchop/** @subwaystation
modules/nf-core/odgi/view/** @subwaystation
modules/nf-core/odgi/viz/** @subwaystation
modules/nf-core/oncocnv/** @marrip
modules/nf-core/openms/decoydatabase/** @jonasscheid
modules/nf-core/optitype/** @apeltzer
modules/nf-core/paftools/sam2paf/** @DLBPointon
modules/nf-core/pairix/** @jianhong
modules/nf-core/pairtools/dedup/** @jianhong
modules/nf-core/pairtools/flip/** @jianhong
modules/nf-core/pairtools/merge/** @nservant
modules/nf-core/pairtools/parse/** @jianhong
modules/nf-core/pairtools/restrict/** @jianhong
modules/nf-core/pairtools/select/** @jianhong
modules/nf-core/pairtools/sort/** @jianhong @nservant
modules/nf-core/pairtools/stats/** @nservant
modules/nf-core/panaroo/run/** @rpetit3
modules/nf-core/pangolin/** @kevinmenden @drpatelh
modules/nf-core/parabricks/applybqsr/** @bsiranosian
modules/nf-core/parabricks/fq2bam/** @bsiranosian @adamrtalbot
modules/nf-core/paraclu/** @mashehu
modules/nf-core/paragraph/idxdepth/** @nvnieuwk
modules/nf-core/paragraph/multigrmpy/** @nvnieuwk
modules/nf-core/paragraph/vcf2paragraph/** @nvnieuwk
modules/nf-core/pasty/** @rpetit3
modules/nf-core/pbbam/pbmerge/** @sguizard
modules/nf-core/pbccs/** @sguizard
modules/nf-core/pbptyper/** @rpetit3
modules/nf-core/pear/** @mirpedrol
modules/nf-core/peddy/** @rannick
modules/nf-core/peka/** @kkuret @codeprimate123 @chris-cheshire @charlotteanne
modules/nf-core/phantompeakqualtools/** @drpatelh @edmundmiller @JoseEspinosa
modules/nf-core/phispy/** @jvfe
modules/nf-core/phyloflash/** @abhi18av
modules/nf-core/picard/addorreplacereadgroups/** @sateeshperi @mjcipriano @hseabolt @cmatKhan @muffato
modules/nf-core/picard/bedtointervallist/** @kevinmenden @matthdsm
modules/nf-core/picard/cleansam/** @sateeshperi @mjcipriano @hseabolt
modules/nf-core/picard/collecthsmetrics/** @projectoriented @matthdsm
modules/nf-core/picard/collectinsertsizemetrics/** @FerriolCalvet
modules/nf-core/picard/collectmultiplemetrics/** @drpatelh
modules/nf-core/picard/collectrnaseqmetrics/** @anoronh4
modules/nf-core/picard/collectwgsmetrics/** @drpatelh @flowuenne @lassefolkersen @ramprasadn
modules/nf-core/picard/createsequencedictionary/** @sateeshperi @mjcipriano @hseabolt
modules/nf-core/picard/crosscheckfingerprints/** @matthdsm
modules/nf-core/picard/fastqtosam/** @matthdsm
modules/nf-core/picard/filtersamreads/** @jfy133
modules/nf-core/picard/fixmateinformation/** @sateeshperi @mjcipriano @hseabolt
modules/nf-core/picard/liftovervcf/** @lucpen @ramprasadn
modules/nf-core/picard/markduplicates/** @drpatelh @projectoriented @ramprasadn
modules/nf-core/picard/mergesamfiles/** @drpatelh
modules/nf-core/picard/renamesampleinvcf/** @Lucpen
modules/nf-core/picard/scatterintervalsbyns/** @nvnieuwk
modules/nf-core/picard/sortsam/** @jfy133
modules/nf-core/picard/sortvcf/** @ramprasadn
modules/nf-core/pilon/** @scorreard
modules/nf-core/pindel/pindel/** @marrip
modules/nf-core/pints/caller/** @edmundmiller
modules/nf-core/pirate/** @rpetit3
modules/nf-core/plasmidfinder/** @rpetit3
modules/nf-core/plasmidid/** @joseespinosa @drpatelh
modules/nf-core/platypus/** @kubranarci
modules/nf-core/plink2/extract/** @nebfield
modules/nf-core/plink2/score/** @nebfield
modules/nf-core/plink2/vcf/** @nebfield
modules/nf-core/plink/bcf/** @atrigila
modules/nf-core/plink/exclude/** @atrigila
modules/nf-core/plink/extract/** @nebfield
modules/nf-core/plink/indep/** @atrigila
modules/nf-core/plink/indeppairwise/** @atrigila
modules/nf-core/plink/recode/** @atrigila
modules/nf-core/plink/vcf/** @Mxrcon @abhi18av
modules/nf-core/pmdtools/filter/** @alexandregilardet
modules/nf-core/pneumocat/** @rpetit3
modules/nf-core/porechop/abi/** @sofstam
modules/nf-core/porechop/porechop/** @ggabernet @jasmezz @d4straub @LaurenceKuhl @SusiJo @jonasscheid @jonoave @GokceOGUZ @jfy133
modules/nf-core/preseq/ccurve/** @drpatelh @edmundmiller
modules/nf-core/preseq/lcextrap/** @drpatelh @edmundmiller
modules/nf-core/pretextmap/** @marrip @getrudeln
modules/nf-core/pretextsnapshot/** @epaule
modules/nf-core/prinseqplusplus/** @jfy133
modules/nf-core/prodigal/** @grst
modules/nf-core/prokka/** @rpetit3
modules/nf-core/propr/logratio/** @suzannejin @oprana22
modules/nf-core/propr/propd/** @suzannejin
modules/nf-core/proteus/readproteingroups/** @WackerO
modules/nf-core/pureclip/** @charlotteanne @marcjones
modules/nf-core/purecn/coverage/** @aldosr @lbeltrame
modules/nf-core/purecn/intervalfile/** @aldosr @lbeltrame
modules/nf-core/purecn/normaldb/** @aldosr @lbeltrame
modules/nf-core/purecn/run/** @aldosr @lbeltrame
modules/nf-core/purgedups/calcuts/** @mahesh-panchal
modules/nf-core/purgedups/getseqs/** @mahesh-panchal
modules/nf-core/purgedups/histplot/** @mahesh-panchal
modules/nf-core/purgedups/pbcstat/** @mahesh-panchal
modules/nf-core/purgedups/purgedups/** @mahesh-panchal
modules/nf-core/purgedups/splitfa/** @mahesh-panchal
modules/nf-core/pycoqc/** @joseespinosa @drpatelh
modules/nf-core/pydamage/analyze/** @maxibor
modules/nf-core/pydamage/filter/** @maxibor
modules/nf-core/pyrodigal/** @louperelo
modules/nf-core/qcat/** @yuukiiwa @drpatelh
modules/nf-core/qualimap/bamqccram/** @FriederikeHanssen
modules/nf-core/qualimap/bamqc/** @phue
modules/nf-core/qualimap/rnaseq/** @FriederikeHanssen
modules/nf-core/quast/** @drpatelh @kevinmenden
modules/nf-core/quilt/quilt/** @atrigila
modules/nf-core/racon/** @avantonder
modules/nf-core/rapidnj/** @aunderwo @avantonder
modules/nf-core/rasusa/** @thanhleviet
modules/nf-core/raven/** @fmalmeida
modules/nf-core/raxmlng/** @avantonder @aunderwo
modules/nf-core/rgi/main/** @rpetit3 @jfy133
modules/nf-core/rhocall/annotate/** @ramprasadn
modules/nf-core/rmarkdownnotebook/** @grst
modules/nf-core/roary/** @rpetit3
modules/nf-core/rsem/calculateexpression/** @drpatelh @kevinmenden
modules/nf-core/rsem/preparereference/** @drpatelh @kevinmenden
modules/nf-core/rseqc/bamstat/** @drpatelh @kevinmenden
modules/nf-core/rseqc/inferexperiment/** @drpatelh @kevinmenden
modules/nf-core/rseqc/innerdistance/** @drpatelh @kevinmenden
modules/nf-core/rseqc/junctionannotation/** @drpatelh @kevinmenden
modules/nf-core/rseqc/junctionsaturation/** @drpatelh @kevinmenden
modules/nf-core/rseqc/readdistribution/** @drpatelh @kevinmenden
modules/nf-core/rseqc/readduplication/** @drpatelh @kevinmenden
modules/nf-core/rseqc/tin/** @drpatelh
modules/nf-core/rtgtools/format/** @nvnieuwk
modules/nf-core/rtgtools/pedfilter/** @nvnieuwk
modules/nf-core/rtgtools/rocplot/** @nvnieuwk
modules/nf-core/rtgtools/vcfeval/** @nvnieuwk
modules/nf-core/salmon/index/** @kevinmenden @drpatelh
modules/nf-core/salmon/quant/** @kevinmenden @drpatelh
modules/nf-core/salsa2/** @scorreard
modules/nf-core/sam2lca/analyze/** @maxibor
modules/nf-core/sambamba/flagstat/** @kubranarci
modules/nf-core/sambamba/markdup/** @BioInf2305
modules/nf-core/samblaster/** @lescai
modules/nf-core/samtools/ampliconclip/** @bjohnnyd
modules/nf-core/samtools/bam2fq/** @lescai
modules/nf-core/samtools/calmd/** @JackCurragh
modules/nf-core/samtools/cat/** @matthdsm
modules/nf-core/samtools/collatefastq/** @lescai @maxulysse @matthdsm
modules/nf-core/samtools/collate/** @priyanka-surana
modules/nf-core/samtools/convert/** @FriederikeHanssen @maxulysse
modules/nf-core/samtools/coverage/** @LouisLeNezet
modules/nf-core/samtools/depth/** @louperelo @nevinwu
modules/nf-core/samtools/dict/** @muffato
modules/nf-core/samtools/faidx/** @drpatelh @phue
modules/nf-core/samtools/fasta/** @priyanka-surana
modules/nf-core/samtools/fastq/** @priyanka-surana @suzannejin
modules/nf-core/samtools/fixmate/** @sppearce
modules/nf-core/samtools/flagstat/** @drpatelh
modules/nf-core/samtools/getrg/** @matthdsm
modules/nf-core/samtools/idxstats/** @drpatelh
modules/nf-core/samtools/import/** @matthdsm
modules/nf-core/samtools/index/** @drpatelh @maxulysse
modules/nf-core/samtools/markdup/** @priyanka-surana
modules/nf-core/samtools/merge/** @drpatelh @yuukiiwa @maxulysse @FriederikeHanssen @ramprasadn
modules/nf-core/samtools/mpileup/** @drpatelh @joseespinosa
modules/nf-core/samtools/reheader/** @louislenezet
modules/nf-core/samtools/sort/** @drpatelh
modules/nf-core/samtools/stats/** @drpatelh @FriederikeHanssen @ramprasadn
modules/nf-core/samtools/view/** @drpatelh @joseespinosa @FriederikeHanssen @priyanka-surana
modules/nf-core/scimap/mcmicro/** @luiskuhn
modules/nf-core/scoary/** @rpetit3
modules/nf-core/scramble/clusteranalysis/** @nvnieuwk
modules/nf-core/scramble/clusteridentifier/** @nvnieuwk
modules/nf-core/seacr/callpeak/** @chris-cheshire
modules/nf-core/segemehl/align/** @BarryDigby
modules/nf-core/segemehl/index/** @BarryDigby
modules/nf-core/semibin/singleeasybin/** @BigDataBiology
modules/nf-core/sentieon/** @DonFreed
modules/nf-core/sentieon/applyvarcal/** @assp8200
modules/nf-core/sentieon/bwaindex/** @drpatelh @maxulysse
modules/nf-core/sentieon/bwamem/** @asp8200
modules/nf-core/sentieon/datametrics/** @ramprasadn
modules/nf-core/sentieon/dedup/** @asp8200
modules/nf-core/sentieon/dnamodelapply/** @ramprasadn
modules/nf-core/sentieon/dnascope/** @ramprasadn
modules/nf-core/sentieon/gvcftyper/** @asp8200
modules/nf-core/sentieon/haplotyper/** @asp8200
modules/nf-core/sentieon/readwriter/** @ramprasadn
modules/nf-core/sentieon/tnhaplotyper2/** @asp8200
modules/nf-core/sentieon/tnscope/** @ramprasadn
modules/nf-core/sentieon/varcal/** @asp8200
modules/nf-core/sentieon/wgsmetrics/** @ramprasadn
modules/nf-core/seqkit/fx2tab/** @heuermh
modules/nf-core/seqkit/grep/** @Joon-Klaps
modules/nf-core/seqkit/pair/** @sateeshperi @mjcipriano @hseabolt
modules/nf-core/seqkit/replace/** @mjcipriano
modules/nf-core/seqkit/sliding/** @DLBPointon
modules/nf-core/seqkit/split2/** @FriederikeHanssen
modules/nf-core/seqkit/stats/** @Midnighter
modules/nf-core/seqkit/tab2fx/** @heuermh
modules/nf-core/seqsero2/** @rpetit3
modules/nf-core/seqtk/cutn/** @DLBPointon
modules/nf-core/seqtk/mergepe/** @emnilsson
modules/nf-core/seqtk/rename/** @hseabolt @mjcipriano @sateeshperi
modules/nf-core/seqtk/sample/** @kaurravneet4123 @sidorov-si @adamrtalbot
modules/nf-core/seqtk/seq/** @hseabolt @mjcipriano @sateeshperi
modules/nf-core/seqtk/subseq/** @sidorov-si
modules/nf-core/sequencetools/pileupcaller/** @TCLamnidis
modules/nf-core/sequenzautils/bam2seqz/** @kaurravneet4123
modules/nf-core/sequenzautils/gcwiggle/** @kaurravneet4123
modules/nf-core/seqwish/induce/** @heuermh
modules/nf-core/seroba/run/** @rpetit3
modules/nf-core/sexdeterrmine/** @TCLamnidis
modules/nf-core/sgdemux/** @nh13 @sam-white04
modules/nf-core/shapeit5/ligate/** @louislenezet
modules/nf-core/shapeit5/phasecommon/** @LouisLeNezet
modules/nf-core/shapeit5/phaserare/** @LouisLeNezet
modules/nf-core/shapeit5/switch/** @LouisLeNezet
modules/nf-core/shasta/** @fmalmeida
modules/nf-core/shasum/** @matthdsm
modules/nf-core/shigatyper/** @rpetit3
modules/nf-core/shigeifinder/** @rpetit3
modules/nf-core/shinyngs/app/** @pinin4fjords
modules/nf-core/shinyngs/staticdifferential/** @pinin4fjords
modules/nf-core/shinyngs/staticexploratory/** @pinin4fjords
modules/nf-core/shinyngs/validatefomcomponents/** @pinin4fjords
modules/nf-core/shovill/** @rpetit3
modules/nf-core/sickle/** @BioInf2305
modules/nf-core/simpleaf/index/** @fmalmeida @maxulysse @Khajidu @apeltzer @pinin4fjords
modules/nf-core/simpleaf/quant/** @fmalmeida @maxulysse @Khajidu @apeltzer @pinin4fjords
modules/nf-core/sistr/** @rpetit3
modules/nf-core/slimfastq/** @Midnighter
modules/nf-core/smncopynumbercaller/** @peterpru
modules/nf-core/smoothxg/** @heuermh, @subwaystation
modules/nf-core/smoove/call/** @scorreard @nvnieuwk
modules/nf-core/snakemake/** @adamrtalbot
modules/nf-core/snapaligner/align/** @matthdsm
modules/nf-core/snapaligner/index/** @matthdsm
modules/nf-core/sniffles/** @christopher-hakkaart @yuukiiwa
modules/nf-core/snippy/core/** @rpetit3
modules/nf-core/snippy/run/** @rpetit3
modules/nf-core/snpdists/** @abhi18av
modules/nf-core/snpeff/download/** @maxulysse
modules/nf-core/snpeff/snpeff/** @maxulysse
modules/nf-core/snpsift/annotate/** @LlaneroHiboreo
modules/nf-core/snpsift/dbnsfp/** @LlaneroHiboreo
modules/nf-core/snpsift/split/** @SusiJo @jonasscheid
modules/nf-core/snpsites/** @avantonder
modules/nf-core/somalier/ancestry/** @atrigila
modules/nf-core/somalier/extract/** @ashotmarg @nvnieuwk
modules/nf-core/somalier/relate/** @ashotmarg @nvnieuwk
modules/nf-core/sortmerna/** @drpatelh @mashehu
modules/nf-core/sourmash/compare/** @taylorreiter
modules/nf-core/sourmash/gather/** @vmikk @taylorreiter
modules/nf-core/sourmash/index/** @emnilsson
modules/nf-core/sourmash/sketch/** @Midnighter
modules/nf-core/sourmash/taxannotate/** @vmikk @taylorreiter
modules/nf-core/spaceranger/count/** @grst
modules/nf-core/spaceranger/mkgtf/** @grst
modules/nf-core/spaceranger/mkref/** @grst
modules/nf-core/spades/** @JoseEspinosa @drpatelh @d4straub
modules/nf-core/spatyper/** @rpetit3
modules/nf-core/spring/compress/** @xec-cm
modules/nf-core/spring/decompress/** @xec-cm
modules/nf-core/sratools/fasterqdump/** @Midnighter
modules/nf-core/sratools/prefetch/** @Midnighter
modules/nf-core/srst2/srst2/** @jvhagey
modules/nf-core/ssuissero/** @rpetit3
modules/nf-core/stadeniolib/scramble/** @matthdsm
modules/nf-core/staphopiasccmec/** @rpetit3
modules/nf-core/star/align/** @kevinmenden @drpatelh @praveenraj2018
modules/nf-core/star/genomegenerate/** @kevinmenden @drpatelh
modules/nf-core/star/starsolo/** @kevinmenden @ggabernet @grst @fmalmeida @rhreynolds @apeltzer @vivian-chen16 @maxulysse @joaodemeirelles
modules/nf-core/stecfinder/** @rpetit3
modules/nf-core/stitch/** @saulpierotti
modules/nf-core/stranger/** @ljmesi
modules/nf-core/strelka/germline/** @arontommi
modules/nf-core/strelka/somatic/** @drpatelh
modules/nf-core/stringtie/merge/** @yuukiiwa
modules/nf-core/stringtie/stringtie/** @drpatelh
modules/nf-core/subread/featurecounts/** @ntoda03
modules/nf-core/survivor/filter/** @LlaneroHiboreo
modules/nf-core/survivor/merge/** @nvnieuwk
modules/nf-core/survivor/simsv/** @nvnieuwk
modules/nf-core/svaba/** @kubranarci
modules/nf-core/svdb/merge/** @ramprasadn
modules/nf-core/svdb/query/** @ramprasadn
modules/nf-core/svtk/baftest/** @nvnieuwk
modules/nf-core/svtk/countsvtypes/** @nvnieuwk
modules/nf-core/svtk/rdtest2vcf/** @nvnieuwk
modules/nf-core/svtk/standardize/** @nvnieuwk
modules/nf-core/svtk/vcf2bed/** @nvnieuwk
modules/nf-core/svtyper/svtyper/** @kubranarci
modules/nf-core/tabix/bgzip/** @joseespinosa @drpatelh @maxulysse @nvnieuwk
modules/nf-core/tabix/bgziptabix/** @maxulysse @DLBPointon
modules/nf-core/tabix/tabix/** @joseespinosa @drpatelh @maxulysse
modules/nf-core/tailfindr/** @lucacozzuto
modules/nf-core/taxpasta/merge/** @sofstam @jfy133
modules/nf-core/taxpasta/standardise/** @Midnighter
modules/nf-core/tbprofiler/profile/** @rpetit3
modules/nf-core/tcoffee/align/** @luisas
modules/nf-core/tiara/tiara/** @prototaxites
modules/nf-core/tiddit/cov/** @projectoriented @ramprasadn
modules/nf-core/tiddit/sv/** @maxulysse
modules/nf-core/topas/gencons/** @aidaanva
modules/nf-core/transdecoder/longorf/** @Danilo2771
modules/nf-core/transdecoder/predict/** @Danilo2771
modules/nf-core/trimgalore/** @drpatelh @FelixKrueger
modules/nf-core/trimmomatic/** @alyssa-ab
modules/nf-core/trinity/** @timslittle
modules/nf-core/truvari/bench/** @nvnieuwk
modules/nf-core/ucsc/bedclip/** @drpatelh
modules/nf-core/ucsc/bedgraphtobigwig/** @drpatelh
modules/nf-core/ucsc/bedtobigbed/** @drpatelh
modules/nf-core/ucsc/bigwigaverageoverbed/** @jianhong
modules/nf-core/ucsc/gtftogenepred/** @BarryDigby @anoronh4
modules/nf-core/ucsc/liftover/** @nebfield
modules/nf-core/ucsc/wigtobigwig/** @jianhong @projectoriented
modules/nf-core/ultra/align/** @sguizard
modules/nf-core/ultra/index/** @sguizard
modules/nf-core/ultra/pipeline/** @sguizard @lassefolkersen @ksahlin