fix-linting.yml

name: fix-linting
run-name: fix linting (automated)
on:
  issue_comment:
    types: [created]

jobs:
  fix-linting:
    # Only run if comment is on a PR with the main repo, and if it contains the magic keywords
    if: >
      contains(github.event.comment.html_url, '/pull/') &&
      contains(github.event.comment.body, '@nf-core-bot fix linting') &&
      github.repository == 'nf-core/modules'
    runs-on: ubuntu-latest
    steps:
      # Use the @nf-core-bot token to check out so we can push later
      - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4
        with:
          token: ${{ secrets.nf_core_bot_auth_token }}

      # indication that the linting is being fixed
      - name: React on comment
        uses: peter-evans/create-or-update-comment@71345be0265236311c031f5c7866368bd1eff043 # v4
        with:
          comment-id: ${{ github.event.comment.id }}
          reactions: eyes

      # Action runs on the issue comment, so we don't get the PR by default
      # Use the gh cli to check out the PR
      - name: Checkout Pull Request
        run: gh pr checkout ${{ github.event.issue.number }}
        env:
          GITHUB_TOKEN: ${{ secrets.nf_core_bot_auth_token }}

      - uses: actions/setup-node@0a44ba7841725637a19e28fa30b79a866c81b0a6 # v4

      - name: Install Prettier
        run: npm install -g prettier @prettier/plugin-php

      # Check that we actually need to fix something
      - name: Run 'prettier --check'
        id: prettier_status
        run: |
          if prettier --check ${GITHUB_WORKSPACE}; then
            echo "::set-output name=result::pass"
          else
            echo "::set-output name=result::fail"
          fi
      - name: Run 'prettier --write'
        if: steps.prettier_status.outputs.result == 'fail'
        run: prettier --write ${GITHUB_WORKSPACE}

      - name: Post nothing-to-do comment
        if: steps.prettier_status.outputs.result == 'pass'
        uses: peter-evans/create-or-update-comment@71345be0265236311c031f5c7866368bd1eff043 # v4
        with:
          issue-number: ${{ github.event.issue.number }}
          body: |
            Nothing for me to do here! :shrug:
            This is probably because the linting errors come from `nf-core lint` and have to be fixed manually (or with `nf-core lint --fix`).

      - name: Commit & push changes
        if: steps.prettier_status.outputs.result == 'fail'
        run: |
          git config user.email "core@nf-co.re"
          git config user.name "nf-core-bot"
          git config push.default upstream
          git add .
          git status
          git commit -m "[automated] Fix linting with Prettier"
          git push