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Use install-gh-release GitHub Action #370

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Use install-gh-release GitHub Action #370

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84944c0
ci: Use action-install-gh-release
edmundmiller Jan 5, 2024
0d16ef7
ci: Remove extension-matching
edmundmiller Jan 5, 2024
39a4923
ci: Try setting binaries-location
edmundmiller Jan 5, 2024
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51 changes: 27 additions & 24 deletions .github/workflows/ci.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -32,13 +32,20 @@ jobs:
- uses: actions/checkout@v3

- name: Setup Nextflow
uses: nf-core/setup-nextflow@v1

- name: Install nf-test
if: steps.cache-software.outputs.cache-hit != 'true'
run: |
wget -qO- https://code.askimed.com/install/nf-test | bash
sudo mv nf-test /usr/local/bin/
uses: jaxxstorm/[email protected]
with:
repo: nextflow-io/nextflow
tag: v23.10.0
extension-matching: disable
binaries-location: nextflow
cache: enable

- name: Setup nf-test
uses: jaxxstorm/[email protected]
with:
repo: https://github.com/askimed/nf-test
tag: "${{ env.NFTEST_VER }}"
cache: enable

- name: List nf-test
id: list
Expand Down Expand Up @@ -66,25 +73,21 @@ jobs:
- name: Check out pipeline code
uses: actions/checkout@v4

- name: Cache Nextflow installation
id: cache-software
uses: actions/cache@v3
- name: Setup Nextflow
uses: jaxxstorm/[email protected]
with:
path: |
/usr/local/bin/nf-test
/home/runner/.nf-test/nf-test.jar
key: methylseq-${{ runner.os }}-${{ matrix.NXF_VER }}

- name: Install Nextflow
uses: nf-core/setup-nextflow@v1
repo: nextflow-io/nextflow
tag: v23.10.0
extension-matching: disable
binaries-location: nextflow
cache: enable

- name: Setup nf-test
uses: jaxxstorm/[email protected]
with:
version: "${{ matrix.NXF_VER }}"

- name: Install nf-test
if: steps.cache-software.outputs.cache-hit != 'true'
run: |
wget -qO- https://code.askimed.com/install/nf-test | bash
sudo mv nf-test /usr/local/bin/
repo: https://github.com/askimed/nf-test
tag: "${{ env.NFTEST_VER }}"
cache: enable

- name: Set up Singularity
if: matrix.profile == 'singularity'
Expand Down
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