Merge pull request #331 from FelixKrueger/publish_coverage_files

Publish coverage files
nf-core · Aug 22, 2023 · e576ec8 · e576ec8
2 parents 13cb0fe + 107f736
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -6,6 +6,8 @@
 
 ### Bug fixes & refactoring
 
+- 🛠️ Added publishing of coverage (`*cov.gz`) files for NOMe-seq filtered reads for `coverage2cytosine`
+
 ## [v2.4.0](https://github.com/nf-core/methylseq/releases/tag/2.4.0) - 2023-06-02
 
 ### Pipeline Updates

diff --git a/conf/modules.config b/conf/modules.config
@@ -256,6 +256,11 @@ process {
                 path: { "${params.outdir}/bismark/coverage2cytosine/reports" },
                 mode: params.publish_dir_mode,
                 pattern: "*_report.txt.gz"
+            ],
+            publishDir = [
+                path: { "${params.outdir}/bismark/coverage2cytosine/coverage" },
+                mode: params.publish_dir_mode,
+                pattern: "*cov.gz"
             ]
         ]
     }