Merge pull request #333 from ewels/master

Apply easy module updates
nf-core · Aug 24, 2023 · 76ef5de · 76ef5de
2 parents b565c21 + b58eb2a
commit 76ef5de
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Showing 5 changed files with 21 additions and 6 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -5,6 +5,8 @@
 ### Pipeline Updates
 
 - Updated template to nf-core/tools v2.9
+- Updated nf-core modules for FastQC, samtools sort, samtools flagstat
+  - Removes problematic `-m` memory assignment for samtools sort [#81](https://github.com/nf-core/methylseq/issues/81)
 
 ### Bug fixes & refactoring
 

diff --git a/modules.json b/modules.json
@@ -62,7 +62,7 @@
                     },
                     "fastqc": {
                         "branch": "master",
-                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
+                        "git_sha": "bd8092b67b5103bdd52e300f75889442275c3117",
                         "installed_by": ["modules"]
                     },
                     "methyldackel/extract": {
@@ -107,7 +107,7 @@
                     },
                     "samtools/flagstat": {
                         "branch": "master",
-                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
+                        "git_sha": "570ec5bcfe19c49e16c9ca35a7a116563af6cc1c",
                         "installed_by": ["modules"]
                     },
                     "samtools/index": {
@@ -117,7 +117,7 @@
                     },
                     "samtools/sort": {
                         "branch": "master",
-                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
+                        "git_sha": "a0f7be95788366c1923171e358da7d049eb440f9",
                         "installed_by": ["modules"]
                     },
                     "samtools/stats": {

diff --git a/modules/nf-core/fastqc/main.nf b/modules/nf-core/fastqc/main.nf
diff --git a/modules/nf-core/samtools/flagstat/main.nf b/modules/nf-core/samtools/flagstat/main.nf
diff --git a/modules/nf-core/samtools/sort/main.nf b/modules/nf-core/samtools/sort/main.nf