Important! Template update for nf-core/tools v3.0.2 #1030
GitHub Actions / JUnit Test Report
failed
Oct 14, 2024 in 0s
2 tests run, 0 passed, 0 skipped, 2 failed.
Annotations
Check failure on line 1 in Test Process SRATOOLS_FASTERQDUMP
github-actions / JUnit Test Report
Test Process SRATOOLS_FASTERQDUMP.Single-end
Assertion failed:
2 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.09.1-edge
Launching `/home/runner/work/fetchngs/fetchngs/.nf-test-b341db190724a4a54249d2821a1053eb.nf` [insane_rosalind] DSL2 - revision: 93c80db4de
Downloading plugin [email protected]
WARN: Access to undefined parameter `modules_testdata_base_path` -- Initialise it to a default value eg. `params.modules_testdata_base_path = some_value`
ERROR ~ No such file or directory: /home/runner/work/fetchngs/fetchngs/.nf-test/tests/b341db190724a4a54249d2821a1053eb/nullgenomics/sarscov2/illumina/sra/SRR13255544.tar.gz
-- Check script '/home/runner/work/fetchngs/fetchngs/.nf-test-b341db190724a4a54249d2821a1053eb.nf' at line: 33 or see '/home/runner/work/fetchngs/fetchngs/.nf-test/tests/b341db190724a4a54249d2821a1053eb/meta/nextflow.log' file for more details
Nextflow stderr:
Check failure on line 1 in Test Process SRATOOLS_FASTERQDUMP
github-actions / JUnit Test Report
Test Process SRATOOLS_FASTERQDUMP.Paired-end
Assertion failed:
2 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.09.1-edge
Launching `/home/runner/work/fetchngs/fetchngs/.nf-test-d51f7c9e710f09906b7fc40935dce6f6.nf` [voluminous_noyce] DSL2 - revision: 1ba0b2e484
WARN: Access to undefined parameter `modules_testdata_base_path` -- Initialise it to a default value eg. `params.modules_testdata_base_path = some_value`
ERROR ~ No such file or directory: /home/runner/work/fetchngs/fetchngs/.nf-test/tests/d51f7c9e710f09906b7fc40935dce6f6/nullgenomics/sarscov2/illumina/sra/SRR11140744.tar.gz
-- Check script '/home/runner/work/fetchngs/fetchngs/.nf-test-d51f7c9e710f09906b7fc40935dce6f6.nf' at line: 33 or see '/home/runner/work/fetchngs/fetchngs/.nf-test/tests/d51f7c9e710f09906b7fc40935dce6f6/meta/nextflow.log' file for more details
Nextflow stderr:
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