Merge pull request #310 from FriederikeHanssen/schema

Replace [] with null as default
nf-core · Feb 5, 2025 · 957ea27 · 957ea27
2 parents d5ed1e4 + 4cdc76b
commit 957ea27
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Showing 2 changed files with 4 additions and 5 deletions.
diff --git a/nextflow.config b/nextflow.config
@@ -24,7 +24,7 @@ params {
     remove_adapter              = true          // [true, false]
 
     // Options: tooling
-    skip_tools                  = []            // list [fastp, fastqc, kraken, multiqc, checkqc, falco, md5sum, samshee]
+    skip_tools                  = null           // list [fastp, fastqc, kraken, multiqc, checkqc, falco, md5sum, samshee]
 
     // seqtk sample options
     sample_size                 = 100000
@@ -36,7 +36,7 @@ params {
     strandedness                = "auto"        // enum string [auto, reverse, forward, unstranded]
 
     // Options: CheckQC
-    checkqc_config              = []            // file .yaml
+    checkqc_config              = null            // file .yaml
 
     // MultiQC options
     multiqc_config             = null

diff --git a/nextflow_schema.json b/nextflow_schema.json
@@ -18,7 +18,6 @@
                 },
                 "skip_tools": {
                     "type": "string",
-                    "default": "[]",
                     "description": "Comma-separated list of tools to skip (fastp,fastqc,kraken,multiqc,checkqc,falco,md5sum,samshee)"
                 },
                 "sample_size": {
@@ -175,9 +174,9 @@
             "properties": {
                 "checkqc_config": {
                     "type": "string",
-                    "default": "[]",
                     "description": "Path to the checkqc config yml file.",
-                    "fa_icon": "far fa-check-square"
+                    "fa_icon": "far fa-check-square",
+                    "format": "file-path"
                 }
             }
         },