improve mutect2 tests

nf-core · Oct 11, 2024 · da49c80 · da49c80
1 parent a8ab882
commit da49c80
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Showing 3 changed files with 5 additions and 325 deletions.
diff --git a/tests/.nftignore b/tests/.nftignore
@@ -1,3 +1,6 @@
+gatk4/*.{vcf.gz,vcf.gz.tbi}
+gatk4/test/*
+gatk4/test/**
 multiqc/multiqc_data/multiqc.log
 multiqc/multiqc_data/multiqc_data.json
 multiqc/multiqc_data/multiqc_general_stats.txt

diff --git a/tests/mutect2.nf.test b/tests/mutect2.nf.test
@@ -16,7 +16,7 @@ nextflow_pipeline {
 
         then {
             // stable_name: All files + folders in ${params.outdir}/ with a stable name
-            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}'])
+            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}', 'gatk4/test/**/*'])
             // stable_path: All files in ${params.outdir}/ with stable content
             def stable_path = getAllFilesFromDir(params.outdir, ignoreFile: 'tests/.nftignore')
             assertAll(