Merge pull request #38 from nf-core/updategatk

update modules

modules.json

@@ -7,62 +7,62 @@
                 "nf-core": {
                     "cnvkit/batch": {
                         "branch": "master",
-                        "git_sha": "f53b071421340e6fac0806c86ba030e578e94826",
+                        "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
                         "installed_by": ["modules"]
                     },
                     "gatk4/annotateintervals": {
                         "branch": "master",
-                        "git_sha": "d742e3143f2ccb8853c29b35cfcf50b5e5026980",
+                        "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
                         "installed_by": ["modules"]
                     },
                     "gatk4/bedtointervallist": {
                         "branch": "master",
-                        "git_sha": "d3f215802f696f7993f25c759781d2db91232015",
+                        "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
                         "installed_by": ["modules"]
                     },
                     "gatk4/collectreadcounts": {
                         "branch": "master",
-                        "git_sha": "d742e3143f2ccb8853c29b35cfcf50b5e5026980",
+                        "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
                         "installed_by": ["modules"]
                     },
                     "gatk4/createreadcountpanelofnormals": {
                         "branch": "master",
-                        "git_sha": "d742e3143f2ccb8853c29b35cfcf50b5e5026980",
+                        "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
                         "installed_by": ["modules"]
                     },
                     "gatk4/createsomaticpanelofnormals": {
                         "branch": "master",
-                        "git_sha": "d742e3143f2ccb8853c29b35cfcf50b5e5026980",
+                        "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
                         "installed_by": ["bam_create_som_pon_gatk"]
                     },
                     "gatk4/determinegermlinecontigploidy": {
                         "branch": "master",
-                        "git_sha": "60a7dbae179bcfa24c10294cc9a07423a239c19a",
+                        "git_sha": "d6dd4ddea1663edbf15f40e089cc16db96e75f1d",
                         "installed_by": ["modules"]
                     },
                     "gatk4/filterintervals": {
                         "branch": "master",
-                        "git_sha": "d742e3143f2ccb8853c29b35cfcf50b5e5026980",
+                        "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
                         "installed_by": ["modules"]
                     },
                     "gatk4/genomicsdbimport": {
                         "branch": "master",
-                        "git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
+                        "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
                         "installed_by": ["bam_create_som_pon_gatk"]
                     },
                     "gatk4/germlinecnvcaller": {
                         "branch": "master",
-                        "git_sha": "cf607b7749da0a8f5ca2a1e31233e13e3159e2fe",
+                        "git_sha": "d6dd4ddea1663edbf15f40e089cc16db96e75f1d",
                         "installed_by": ["modules"]
                     },
                     "gatk4/indexfeaturefile": {
                         "branch": "master",
-                        "git_sha": "108e1f5bafc045ac19890852a41e8d95ae12aa67",
+                        "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
                         "installed_by": ["modules"]
                     },
                     "gatk4/intervallisttools": {
                         "branch": "master",
-                        "git_sha": "afb604624abcc2fc67a43d70a2de369a50d16105",
+                        "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
                         "installed_by": ["modules"]
                     },
                     "gatk4/mutect2": {
@@ -72,7 +72,7 @@
                     },
                     "gatk4/preprocessintervals": {
                         "branch": "master",
-                        "git_sha": "d742e3143f2ccb8853c29b35cfcf50b5e5026980",
+                        "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
                         "installed_by": ["modules"]
                     },
                     "multiqc": {
@@ -82,17 +82,17 @@
                     },
                     "picard/createsequencedictionary": {
                         "branch": "master",
-                        "git_sha": "20b0918591d4ba20047d7e13e5094bcceba81447",
+                        "git_sha": "49f4e50534fe4b64101e62ea41d5dc43b1324358",
                         "installed_by": ["modules"]
                     },
                     "samtools/faidx": {
                         "branch": "master",
-                        "git_sha": "04fbbc7c43cebc0b95d5b126f6d9fe4effa33519",
+                        "git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
                         "installed_by": ["modules"]
                     },
                     "samtools/index": {
                         "branch": "master",
-                        "git_sha": "04fbbc7c43cebc0b95d5b126f6d9fe4effa33519",
+                        "git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
                         "installed_by": ["modules"]
                     }
                 }