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@Daniel-VM Daniel-VM released this 12 Jun 15:28
· 103 commits to master since this release
2.3.0
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v2.3.0 nf-core/bacass: "Navy Iron Oyster" 2024/06/12

Changed

  • #135 Replaced nf-core MultiQC module with a custom MultiQC module.

Added

  • #135 Implementation of KmerFinder subworkflow Custom Quast, and Custom MultiQC Reports:

    • Added KmerFinder subworkflow for read quality control, purity assessment, and sample grouping based on reference genome estimation.
    • Enhanced Quast Assembly QC to run both general and reference genome-based analyses when KmerFinder is invoked.
    • Implemented custom MultiQC module with multiqc_config.yml files for different assembly modes (short, long, hybrid).
    • Generated custom MultiQC HTML report consolidating metrics from KmerFinder, Quast, and other relevant sources.

  • #133 Update nf-core/bacass to the new nf-core 2.14.1 TEMPLATE.

Fixed

  • #134 - Fixed samples reported of prokka/bakta in multiqc report.

  • #125 - Fixed conflicting settings in save_trimmed_fail parameter.

Dependencies

Deprecated

Assets 2
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