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2.2.0: Merge pull request #122 from nf-core/dev
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@Daniel-VM Daniel-VM released this 17 Apr 08:05
· 194 commits to master since this release
2.2.0
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v2.2.0 nf-core/bacass: "Aqua Platinum Zebrafish" 2024/03/27

Changed

  • #111 - Update nf-core/bacass to 2.12, and #117 to 2.13.1 TEMPLATE.

Added

  • #104, #106 - Added dragonflye module and enbled draft genome polishing with short-reads.

Fixed

  • #123 - Add fallback to download_pipeline.yml when the pipeline does not support stub runs (#2846)

Dependencies

  • #120 - Update local and nf-core modules (version update an minnor code changes).
Tool Previous version New version
Bakta 1.8.2 1.9.3
Canu 2.2 -
Dragonflye 1.1.2 -
Fastp 0.23.4 -
Kraken2 2.1.2 -
Miniasm 0.3_r179 -
Minimap2 2.2 2.24
Nanoplot 1.41.6 -
Porechop 0.2.4 -
Prokka 1.14.6 -
Quast 5.2.0 -
Racon 1.4.20 -
Samtools 1.17 1.19.2
Untar 1.34 -
Dfast 1.2.20 -
Medaka 1.4.3-0 -
Nanopolish 0.14.0 -
PycoQC 2.5.2 -
Unicycler 0.4.8 -

Deprecated

Assets 2
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