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Release 2.1.0#97

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mashehu merged 61 commits intomasternf-core/bacass:masterfrom devnf-core/bacass:devCopy head branch name to clipboardOct 23, 2023

+4,849-3,385

Commits

Commits on Aug 27, 2021

• bump version to 2.1.0dev

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Commits on Aug 28, 2021

• Merge pull request #62 from d4straub/dev

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Commits on Dec 14, 2021

• Template update for nf-core/tools version 2.2

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Commits on Mar 15, 2022

• Template update for nf-core/tools version 2.3

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Commits on Mar 23, 2022

• Template update for nf-core/tools version 2.3.1

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Commits on Mar 24, 2022

• Template update for nf-core/tools version 2.3.2

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Commits on May 16, 2022

• Template update for nf-core/tools version 2.4

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Commits on Aug 30, 2022

• Template update for nf-core/tools version 2.5

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Commits on Sep 1, 2022

• Template update for nf-core/tools version 2.5.1

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Commits on Oct 4, 2022

• Template update for nf-core/tools version 2.6

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Commits on Dec 8, 2022

• Template update for nf-core/tools version 2.7.1

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Commits on Dec 19, 2022

• Template update for nf-core/tools version 2.7.2

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Commits on Apr 28, 2023

• Template update for nf-core/tools version 2.8

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Commits on Jun 30, 2023

• Template update for nf-core/tools version 2.9

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Commits on Sep 11, 2023

• reslove conflict after nf-core template-2.9 update

  Daniel-VM

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• fix nf-core linting

  Daniel-VM

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• fix editorConfig

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• fix prettier typo

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Commits on Sep 12, 2023

• fix CI test

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Commits on Sep 13, 2023

• Fix missing snippet while merging conflicts

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Commits on Sep 19, 2023

• make patch to Nanoplot

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• Apply suggestios from code reviewer

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• fix prettier after adding code-reviewer suggestions

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• removed lines causing warnings

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Commits on Sep 20, 2023

• Merge pull request #86 from Daniel-VM/dev

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• fix doc samplesheet file extension

  Daniel-VM

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Commits on Sep 21, 2023

• update access to test datasets

  Daniel-VM

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Commits on Sep 22, 2023

• add nf-validation on samplesheet

  Daniel-VM

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• add reviewer suggestions

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Commits on Sep 23, 2023

• Merge pull request #88 from Daniel-VM/dev

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Commits on Sep 25, 2023

• Template update for nf-core/tools version 2.10

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Commits on Sep 26, 2023

• fix and merge nf-core template v2.10

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• Merge pull request #91 from Daniel-VM/dev

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Commits on Sep 27, 2023

• incorportate subworkflo update

  Daniel-VM

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• add multiqc for shortreads assembly

  Daniel-VM

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Commits on Oct 10, 2023

• add multiqc files for lonreads

  Daniel-VM

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• rename nanoplot stats output

  Daniel-VM

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• apply reviewer suggestions on #93

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Commits on Oct 11, 2023

• update changelog

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• fix prettier #93

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• Merge pull request #93 from Daniel-VM/dev

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Commits on Oct 16, 2023

• add gene annotation with bakta

  Daniel-VM

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• remove unnecesary untar step

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• update documentation bakta

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Commits on Oct 17, 2023

• new output organisation for bakta

  Daniel-VM

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• remove warning message baktadbdowload

  Daniel-VM

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• downgrade baktadbdownload to overcome dependency conflicts

  Daniel-VM

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• prettier fix

  Daniel-VM

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• fix minor typo

  Daniel-VM

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Commits on Oct 18, 2023

• bump version v2.1.2dev

  Daniel-VM

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Commits on Oct 19, 2023

• update multiqc to v1.17

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• update changelog #95

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• add reviewer suggestions #95

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Commits on Oct 20, 2023

• Merge pull request #95 from Daniel-VM/dev

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• fix changelog in v2.1.0dev

  Daniel-VM

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• bumpversion and update changelog

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• eliminate unnecesary TODOs

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Commits on Oct 23, 2023

• fix console indentation

  Daniel-VM

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• Merge pull request #96 from Daniel-VM/dev

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• dummy change to update github test #97

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• Merge pull request #98 from Daniel-VM/dev

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