Bump version to 2.11.0

CHANGELOG.md

@@ -3,7 +3,7 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## nf-core/ampliseq version 2.11.0dev
+## nf-core/ampliseq version 2.11.0 - 2024-08-06
 
 ### `Added`
 

assets/multiqc_config.yml

@@ -1,7 +1,7 @@
 report_comment: >
-  This report has been generated by the <a href="https://github.com/nf-core/ampliseq/tree/dev" target="_blank">nf-core/ampliseq</a>
+  This report has been generated by the <a href="https://github.com/nf-core/ampliseq/releases/tag/2.11.0" target="_blank">nf-core/ampliseq</a>
   analysis pipeline. For information about how to interpret these results, please see the
-  <a href="https://nf-co.re/ampliseq/dev/docs/output" target="_blank">documentation</a>.
+  <a href="https://nf-co.re/ampliseq/2.11.0/docs/output" target="_blank">documentation</a>.
 report_section_order:
   "nf-core-ampliseq-methods-description":
     order: -1000

assets/report_template.Rmd

@@ -1544,7 +1544,7 @@ for (folder in ancom) {
 any_ancombc <- !isFALSE(params$ancombc) || !isFALSE(params$ancombc_formula)
 ```
 
-```{r, eval = !isFALSE(params$any_ancombc), results='asis'}
+```{r, eval = !isFALSE(any_ancombc), results='asis'}
 cat(paste0("
 ## ANCOM-BC
 

nextflow.config

@@ -357,7 +357,7 @@ manifest {
     description     = """Amplicon sequencing analysis workflow using DADA2 and QIIME2"""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=23.04.0'
-    version         = '2.11.0dev'
+    version         = '2.11.0'
     doi             = '10.5281/zenodo.1493841,10.3389/fmicb.2020.550420'
 }