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Move table name
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erikrikarddaniel committed Jul 24, 2024
1 parent 79297b6 commit d8a851f
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion modules/local/qiime2_ancom_tax.nf
Original file line number Diff line number Diff line change
Expand Up @@ -43,7 +43,7 @@ process QIIME2_ANCOM_TAX {
--to-tsv
if [ \$(grep -v '^#' -c ${table.baseName}-level-${taxlevel}.feature-table.tsv) -lt 2 ]; then
echo ${taxlevel} > ancom/"${table.baseName}_WARNING_Summing_your_data_at_taxonomic_level_${taxlevel}_produced_less_than_two_rows_(taxa)_ANCOM_cant_proceed_--_did_you_specify_a_bad_reference_taxonomy.txt"
echo ${taxlevel} > ancom/"WARNING_${table.baseName}_Summing_your_data_at_taxonomic_level_${taxlevel}_produced_less_than_two_rows_(taxa)_ANCOM_cant_proceed_--_did_you_specify_a_bad_reference_taxonomy.txt"
else
qiime composition add-pseudocount \\
--i-table lvl${taxlevel}-${table} \\
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