Merge pull request #659 from d4straub/prepare-release-2.7.1

Prepare release 2.7.1
nf-core · Nov 13, 2023 · a5e0dc3 · a5e0dc3
2 parents e6e000d + b15b316
commit a5e0dc3
Show file tree

Hide file tree

Showing 15 changed files with 17 additions and 17 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -3,7 +3,7 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## nf-core/ampliseq version 2.8.0dev
+## nf-core/ampliseq version 2.7.1 - 2023-11-14
 
 ### `Added`
 

diff --git a/assets/multiqc_config.yml b/assets/multiqc_config.yml
@@ -1,7 +1,7 @@
 report_comment: >
-  This report has been generated by the <a href="https://github.com/nf-core/ampliseq/releases/tag/dev" target="_blank">nf-core/ampliseq</a>
+  This report has been generated by the <a href="https://github.com/nf-core/ampliseq/releases/tag/2.7.1" target="_blank">nf-core/ampliseq</a>
   analysis pipeline. For information about how to interpret these results, please see the
-  <a href="https://nf-co.re/ampliseq/dev/docs/output" target="_blank">documentation</a>.
+  <a href="https://nf-co.re/ampliseq/2.7.1/docs/output" target="_blank">documentation</a>.
 report_section_order:
   "nf-core-ampliseq-methods-description":
     order: -1000

diff --git a/docs/usage.md b/docs/usage.md
@@ -36,7 +36,7 @@ The typical command for running the pipeline is as follows:
 
 ```bash
 nextflow run nf-core/ampliseq \
-    -r 2.7.0 \
+    -r 2.7.1 \
     -profile singularity \
     --input "samplesheet.tsv" \
     --FW_primer GTGYCAGCMGCCGCGGTAA \
@@ -45,7 +45,7 @@ nextflow run nf-core/ampliseq \
     --outdir "./results"
 ```
 
-In this example, `--input` is the [Samplesheet input](#samplesheet-input), other options are [Direct FASTQ input](#direct-fastq-input) and [ASV/OTU fasta input](#asvotu-fasta-input). For more details on metadata, see [Metadata](#metadata). For [Reproducibility](#reproducibility), specify the version to run using `-r` (= release, e.g. 2.7.0, please use the most recent release). See the [nf-core/ampliseq website documentation](https://nf-co.re/ampliseq/parameters) for more information about pipeline specific parameters.
+In this example, `--input` is the [Samplesheet input](#samplesheet-input), other options are [Direct FASTQ input](#direct-fastq-input) and [ASV/OTU fasta input](#asvotu-fasta-input). For more details on metadata, see [Metadata](#metadata). For [Reproducibility](#reproducibility), specify the version to run using `-r` (= release, e.g. 2.7.1, please use the most recent release). See the [nf-core/ampliseq website documentation](https://nf-co.re/ampliseq/parameters) for more information about pipeline specific parameters.
 
 It is possible to not provide primer sequences (`--FW_primer` & `--RV_primer`) and skip primer trimming using `--skip_cutadapt`, but this is only for data that indeed does not contain any PCR primers in their sequences. Also, metadata (`--metadata`) isnt required, but aids downstream analysis.
 

diff --git a/nextflow.config b/nextflow.config
@@ -329,7 +329,7 @@ manifest {
     description     = """Amplicon sequencing analysis workflow using DADA2 and QIIME2"""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=23.04.0'
-    version = '2.8.0dev'
+    version         = '2.7.1'
     doi             = '10.5281/zenodo.1493841'
 }
 

diff --git a/tests/pipeline/doubleprimers.nf.test.snap b/tests/pipeline/doubleprimers.nf.test.snap
diff --git a/tests/pipeline/fasta.nf.test.snap b/tests/pipeline/fasta.nf.test.snap
diff --git a/tests/pipeline/iontorrent.nf.test.snap b/tests/pipeline/iontorrent.nf.test.snap
diff --git a/tests/pipeline/multi.nf.test.snap b/tests/pipeline/multi.nf.test.snap
diff --git a/tests/pipeline/novaseq.nf.test.snap b/tests/pipeline/novaseq.nf.test.snap
diff --git a/tests/pipeline/pacbio_its.nf.test.snap b/tests/pipeline/pacbio_its.nf.test.snap
diff --git a/tests/pipeline/pplace.nf.test.snap b/tests/pipeline/pplace.nf.test.snap
diff --git a/tests/pipeline/reftaxcustom.nf.test.snap b/tests/pipeline/reftaxcustom.nf.test.snap
diff --git a/tests/pipeline/single.nf.test.snap b/tests/pipeline/single.nf.test.snap
diff --git a/tests/pipeline/sintax.nf.test.snap b/tests/pipeline/sintax.nf.test.snap
diff --git a/tests/pipeline/test.nf.test.snap b/tests/pipeline/test.nf.test.snap