update subworkflow fasta_newick_epang_gappa

nf-core · Feb 1, 2024 · 93a5869 · 93a5869
1 parent 039ca64
commit 93a5869
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Showing 30 changed files with 107 additions and 65 deletions.
diff --git a/.nf-core.yml b/.nf-core.yml
@@ -10,3 +10,7 @@ lint:
         - params.report_css
         - params.report_logo
   actions_ci: False
+update:
+  https://github.com/nf-core/modules.git:
+    nf-core:
+      mafft: "feb29be775d9e41750180539e9a3bdce801d0609"
diff --git a/modules.json b/modules.json
@@ -17,12 +17,12 @@
                     },
                     "epang/place": {
                         "branch": "master",
-                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
+                        "git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
                         "installed_by": ["fasta_newick_epang_gappa"]
                     },
                     "epang/split": {
                         "branch": "master",
-                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
+                        "git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
                         "installed_by": ["fasta_newick_epang_gappa"]
                     },
                     "fastqc": {
@@ -32,37 +32,37 @@
                     },
                     "gappa/examineassign": {
                         "branch": "master",
-                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
+                        "git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
                         "installed_by": ["fasta_newick_epang_gappa"]
                     },
                     "gappa/examinegraft": {
                         "branch": "master",
-                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
+                        "git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
                         "installed_by": ["fasta_newick_epang_gappa"]
                     },
                     "gappa/examineheattree": {
                         "branch": "master",
-                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
+                        "git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
                         "installed_by": ["fasta_newick_epang_gappa"]
                     },
                     "hmmer/eslalimask": {
                         "branch": "master",
-                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
+                        "git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
                         "installed_by": ["fasta_newick_epang_gappa"]
                     },
                     "hmmer/eslreformat": {
                         "branch": "master",
-                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
+                        "git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
                         "installed_by": ["fasta_newick_epang_gappa"]
                     },
                     "hmmer/hmmalign": {
                         "branch": "master",
-                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
+                        "git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
                         "installed_by": ["fasta_newick_epang_gappa"]
                     },
                     "hmmer/hmmbuild": {
                         "branch": "master",
-                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
+                        "git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
                         "installed_by": ["fasta_newick_epang_gappa"]
                     },
                     "kraken2/kraken2": {
@@ -112,7 +112,7 @@
                 "nf-core": {
                     "fasta_newick_epang_gappa": {
                         "branch": "master",
-                        "git_sha": "dedc0e31087f3306101c38835d051bf49789445a",
+                        "git_sha": "cfd937a668919d948f6fcbf4218e79de50c2f36f",
                         "installed_by": ["subworkflows"]
                     }
                 }

diff --git a/modules/nf-core/epang/place/environment.yml b/modules/nf-core/epang/place/environment.yml
diff --git a/modules/nf-core/epang/place/main.nf b/modules/nf-core/epang/place/main.nf
diff --git a/modules/nf-core/epang/place/meta.yml b/modules/nf-core/epang/place/meta.yml
diff --git a/modules/nf-core/epang/split/environment.yml b/modules/nf-core/epang/split/environment.yml
diff --git a/modules/nf-core/epang/split/main.nf b/modules/nf-core/epang/split/main.nf
diff --git a/modules/nf-core/epang/split/meta.yml b/modules/nf-core/epang/split/meta.yml
diff --git a/modules/nf-core/gappa/examineassign/environment.yml b/modules/nf-core/gappa/examineassign/environment.yml
diff --git a/modules/nf-core/gappa/examineassign/main.nf b/modules/nf-core/gappa/examineassign/main.nf
diff --git a/modules/nf-core/gappa/examineassign/meta.yml b/modules/nf-core/gappa/examineassign/meta.yml
diff --git a/modules/nf-core/gappa/examinegraft/environment.yml b/modules/nf-core/gappa/examinegraft/environment.yml
diff --git a/modules/nf-core/gappa/examinegraft/main.nf b/modules/nf-core/gappa/examinegraft/main.nf
diff --git a/modules/nf-core/gappa/examinegraft/meta.yml b/modules/nf-core/gappa/examinegraft/meta.yml
diff --git a/modules/nf-core/gappa/examineheattree/environment.yml b/modules/nf-core/gappa/examineheattree/environment.yml
diff --git a/modules/nf-core/gappa/examineheattree/main.nf b/modules/nf-core/gappa/examineheattree/main.nf
diff --git a/modules/nf-core/gappa/examineheattree/meta.yml b/modules/nf-core/gappa/examineheattree/meta.yml
diff --git a/modules/nf-core/hmmer/eslalimask/environment.yml b/modules/nf-core/hmmer/eslalimask/environment.yml
diff --git a/modules/nf-core/hmmer/eslalimask/main.nf b/modules/nf-core/hmmer/eslalimask/main.nf