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New QIIME/UNITE urls
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@erikrikarddaniel
erikrikarddaniel committed Jul 24, 2024
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42 changes: 30 additions & 12 deletions conf/ref_databases.config
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Original file line number Diff line number Diff line change
Expand Up @@ -298,44 +298,62 @@ params {
}
//UNITE for QIIME2, see https://unite.ut.ee/repository.php
'unite-fungi' {
title = "UNITE QIIME release for Fungi - Version 8.3"
file = [ "https://files.plutof.ut.ee/public/orig/C5/54/C5547B97AAA979E45F79DC4C8C4B12113389343D7588716B5AD330F8BDB300C9.tgz" ]
citation = "Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2021): UNITE QIIME release for Fungi. Version 10.05.2021. UNITE Community. https://doi.org/10.15156/BIO/1264708"
title = "UNITE QIIME release for Fungi - Version 10.0"
file = [ "https://s3.hpc.ut.ee/plutof-public/original/db1d6ddb-a35d-48c5-8b1a-ad9dd3310c6d.tgz" ]
citation = "Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2024): UNITE QIIME release for Fungi. Version 04.04.2024. UNITE Community. https://doi.org/10.15156/BIO/2959336"
fmtscript = "taxref_reformat_qiime_unite.sh"
}
'unite-fungi=10.0' {
title = "UNITE QIIME release for Fungi - Version 10.0"
file = [ "https://s3.hpc.ut.ee/plutof-public/original/db1d6ddb-a35d-48c5-8b1a-ad9dd3310c6d.tgz" ]
citation = "Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2024): UNITE QIIME release for Fungi. Version 04.04.2024. UNITE Community. https://doi.org/10.15156/BIO/2959336"
fmtscript = "taxref_reformat_qiime_unite.sh"
}
'unite-fungi=9.0' {
title = "UNITE QIIME release for Fungi - Version 9.0"
file = [ "https://s3.hpc.ut.ee/plutof-public/original/3c22fbc5-ed9e-47a6-a85b-6c81268657e9.tgz" ]
citation = "Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2023): UNITE QIIME release for Fungi. Version 18.07.2023. UNITE Community. https://doi.org/10.15156/BIO/2938079"
fmtscript = "taxref_reformat_qiime_unite.sh"
}
'unite-fungi=8.3' {
title = "UNITE QIIME release for Fungi - Version 8.3"
file = [ "https://files.plutof.ut.ee/public/orig/C5/54/C5547B97AAA979E45F79DC4C8C4B12113389343D7588716B5AD330F8BDB300C9.tgz" ]
file = [ "https://s3.hpc.ut.ee/plutof-public/original/3652451d-7567-4871-a7aa-3ba6c63aa60b.tgz" ]
citation = "Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2021): UNITE QIIME release for Fungi. Version 10.05.2021. UNITE Community. https://doi.org/10.15156/BIO/1264708"
fmtscript = "taxref_reformat_qiime_unite.sh"
}
'unite-fungi=8.2' {
title = "UNITE QIIME release for Fungi - Version 8.2"
file = [ "https://files.plutof.ut.ee/public/orig/98/AE/98AE96C6593FC9C52D1C46B96C2D9064291F4DBA625EF189FEC1CCAFCF4A1691.gz" ]
file = [ "https://s3.hpc.ut.ee/plutof-public/original/6b4e0baf-fc68-4e0e-8e4a-f5cf2d68bf98.gz" ]
citation = "Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2020): UNITE QIIME release for Fungi. Version 04.02.2020. UNITE Community. https://doi.org/10.15156/BIO/786385"
fmtscript = "taxref_reformat_qiime_unite.sh"
}
'unite-alleuk' {
title = "UNITE QIIME release for eukaryotes - Version 9.0"
file = [ "https://files.plutof.ut.ee/public/orig/8F/FC/8FFCC8A730E50FEEF8CFFEEFEF02A22FBCF7E02B7FD31C6649754834D2CB0E6F.tgz" ]
citation = "Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2022): UNITE QIIME release for eukaryotes. Version 16.10.2022. UNITE Community. https://doi.org/10.15156/BIO/2483917"
title = "UNITE QIIME release for eukaryotes - Version 10.0"
file = [ "https://s3.hpc.ut.ee/plutof-public/original/711a503c-589d-4138-a76f-6a8b89460ecf.tgz" ]
citation = "Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2024): UNITE QIIME release for eukaryotes. Version 04.04.2024. UNITE Community. https://doi.org/10.15156/BIO/2959338"
fmtscript = "taxref_reformat_qiime_unite.sh"
}
'unite-alleuk=10.0' {
title = "UNITE QIIME release for eukaryotes - Version 10.0"
file = [ "https://s3.hpc.ut.ee/plutof-public/original/711a503c-589d-4138-a76f-6a8b89460ecf.tgz" ]
citation = "Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2024): UNITE QIIME release for eukaryotes. Version 04.04.2024. UNITE Community. https://doi.org/10.15156/BIO/2959338"
fmtscript = "taxref_reformat_qiime_unite.sh"
}
'unite-alleuk=9.0' {
title = "UNITE QIIME release for eukaryotes - Version 9.0"
file = [ "https://files.plutof.ut.ee/public/orig/8F/FC/8FFCC8A730E50FEEF8CFFEEFEF02A22FBCF7E02B7FD31C6649754834D2CB0E6F.tgz" ]
citation = "Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2022): UNITE QIIME release for eukaryotes. Version 16.10.2022. UNITE Community. https://doi.org/10.15156/BIO/2483917"
file = [ "https://s3.hpc.ut.ee/plutof-public/original/ecc2ed00-1219-42c7-a951-fbe92b8cb733.tgz" ]
citation = "Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2023): UNITE QIIME release for eukaryotes. Version 18.07.2023. UNITE Community. https://doi.org/10.15156/BIO/2938081"
fmtscript = "taxref_reformat_qiime_unite.sh"
}
'unite-alleuk=8.3' {
title = "UNITE QIIME release for eukaryotes - Version 8.3"
file = [ "https://files.plutof.ut.ee/public/orig/48/29/4829D91F763E20F0F4376A60AA53FC9FBE6029A7D1BDC1B45347DD64EDE5D560.tgz" ]
file = [ "https://s3.hpc.ut.ee/plutof-public/original/93683063-613d-4190-877e-26a57a196fc7.tgz" ]
citation = "Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2021): UNITE QIIME release for eukaryotes. Version 10.05.2021. UNITE Community. https://doi.org/10.15156/BIO/1264819"
fmtscript = "taxref_reformat_qiime_unite.sh"
}
'unite-alleuk=8.2' {
title = "UNITE QIIME release for eukaryotes - Version 8.2"
file = [ "https://files.plutof.ut.ee/public/orig/6E/0E/6E0EDD5592003B47C70A1B384C3C784AA32B726AC861CD7E2BD22AEB0278675E.gz" ]
file = [ "https://s3.hpc.ut.ee/plutof-public/original/f53a2174-9fc5-4d9f-8230-59f8772c6c5c.gz" ]
citation = "Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2020): UNITE QIIME release for eukaryotes. Version 04.02.2020. UNITE Community. https://doi.org/10.15156/BIO/786386"
fmtscript = "taxref_reformat_qiime_unite.sh"
}
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7 changes: 5 additions & 2 deletions nextflow_schema.json
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Original file line number Diff line number Diff line change
Expand Up @@ -457,13 +457,16 @@
"enum": [
"silva=138",
"silva",
"unite-fungi",
"unite-fungi=10.0",
"unite-fungi=9.0",
"unite-fungi=8.3",
"unite-fungi=8.2",
"unite-fungi",
"unite-alleuk",
"unite-alleuk=10.0",
"unite-alleuk=9.0",
"unite-alleuk=8.3",
"unite-alleuk=8.2",
"unite-alleuk",
"greengenes85",
"greengenes2",
"greengenes2=2022.10"
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