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prettier
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erikrikarddaniel committed Jul 24, 2024
1 parent 641fc4c commit 1d69762
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8 changes: 4 additions & 4 deletions .devcontainer/devcontainer.json
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"vscode": {
// Set *default* container specific settings.json values on container create.
"settings": {
"python.defaultInterpreterPath": "/opt/conda/bin/python"
"python.defaultInterpreterPath": "/opt/conda/bin/python",
},

// Add the IDs of extensions you want installed when the container is created.
"extensions": ["ms-python.python", "ms-python.vscode-pylance", "nf-core.nf-core-extensionpack"]
}
}
"extensions": ["ms-python.python", "ms-python.vscode-pylance", "nf-core.nf-core-extensionpack"],
},
},
}
8 changes: 1 addition & 7 deletions nextflow_schema.json
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"type": "string",
"help_text": "Choose any of the supported databases, and optionally also specify the version. Database and version are separated by an equal sign (`=`, e.g. `silva=138`) . This will download the desired database and initiate taxonomic classification with QIIME2 and the chosen database.\n\nIf both, `--dada_ref_taxonomy` and `--qiime_ref_taxonomy` are used, DADA2 classification will be used for downstream analysis.\n\nThe following databases are supported:\n- SILVA ribosomal RNA gene database project - 16S rRNA\n- UNITE - eukaryotic nuclear ribosomal ITS region - ITS\n- Greengenes (only testing!)\n\nGenerally, using `silva`, `unite-fungi`, or `unite-alleuk` will select the most recent supported version. For testing purposes, the tiny database `greengenes85` (dereplicated at 85% sequence similarity) is available. For details on what values are valid, please either use an invalid value such as `x` (causing the pipeline to send an error message with all valid values) or see `conf/ref_databases.config`.",
"description": "Name of supported database, and optionally also version number",
"enum": [
"silva=138",
"silva",
"greengenes85",
"greengenes2",
"greengenes2=2022.10"
]
"enum": ["silva=138", "silva", "greengenes85", "greengenes2", "greengenes2=2022.10"]
},
"qiime_ref_tax_custom": {
"type": "string",
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