Nextstrain repository for dengue virus

This repository contains two workflows for the analysis of dengue virus data:

ingest/ - Download data from GenBank, clean and curate it and upload it to S3
phylogenetic/ - Make phylogenetic trees for nextstrain.org
nextclade/ - Make Nextclade datasets for nextstrain/nextclade_data

Each folder contains a README.md with more information.

Documentation

Contributor documentation